Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034121.1-P | Field mustard | nucleus | 89.24 | 84.0 |
| CDY08599 | Canola | nucleus | 71.98 | 74.97 |
| CDY00948 | Canola | cytosol | 60.03 | 62.69 |
| CDX70223 | Canola | cytosol | 57.37 | 55.74 |
| CDY44857 | Canola | nucleus | 55.91 | 54.18 |
| KRG92104 | Soybean | nucleus | 54.45 | 48.35 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 55.25 | 48.2 |
| KRH34682 | Soybean | nucleus | 54.32 | 48.17 |
| Solyc11g007910.1.1 | Tomato | nucleus | 52.46 | 47.14 |
| PGSC0003DMT400070376 | Potato | nucleus | 53.52 | 46.64 |
| PGSC0003DMT400043571 | Potato | nucleus | 51.13 | 44.82 |
| Solyc03g071670.1.1 | Tomato | nucleus | 25.1 | 42.28 |
| CDY04520 | Canola | cytosol, plastid | 31.08 | 34.51 |
| CDX71406 | Canola | cytosol | 21.51 | 28.98 |
| CDY12454 | Canola | nucleus | 9.3 | 10.85 |
| CDY31650 | Canola | nucleus, plastid | 8.9 | 10.4 |
| CDY52188 | Canola | nucleus | 9.43 | 10.37 |
| CDY02344 | Canola | cytosol | 8.9 | 9.74 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 8.37 | 9.31 |
| CDY09519 | Canola | nucleus | 8.5 | 8.93 |
| CDX96975 | Canola | cytosol | 7.3 | 8.01 |
| CDY14941 | Canola | nucleus | 6.37 | 7.73 |
| CDY50063 | Canola | cytosol | 9.43 | 6.46 |
| CDX78978 | Canola | cytosol | 9.03 | 6.01 |
Protein Annotations
| EnsemblPlants:CDY41355 | EnsemblPlantsGene:GSBRNA2T00072916001 | Gene3D:3.30.40.10 | GO:A0A078HRV3 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY41355 | ProteinID:CDY41355.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EF491A |
| UniProt:A0A078HRV3 | MapMan:35.2 | : | : | : | : |
Description
BnaA01g31640DBnaA01g31640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRV3]
Coordinates
chrLK032495:+:243382..247107
Molecular Weight (calculated)
85566.8 Da
IEP (calculated)
5.492
GRAVY (calculated)
-1.023
Length
753 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDIDPLHQK PDSMDGFEDF MDEDCISFES CSTIHNPDND HHDQEDEQPL RRRRRSDHLH QGGGDDIAES SAARQSRILS RWAARQAQEM ITTIERRNRE
101: SELIAIAGLH AVSTLDSSFL REETPRTQAS PPTSSGRAPE RPRPRTQASG ILQMWRELED EHSENGYGSS SREQSPDLGD VESERVRNIV RGLTTDHSSN
201: VRERSDDSRR GEWLGDTERE RVRIIREWMQ MTSQQRGGGG APQVQSEEGR REHTRRDLRR LRGRQALVDL LMRIERERQR ELQGLLEHRA VSDFAHRNRI
301: QSLLRGRFLR SETPSEEVRA PSVAASEIRQ LRERQTVSGL REGARDRPES NTNADNINTT RSNQITANTS EDSQLLNESL NSSRQGNGTP LLPNDLGNSG
401: SNQPNPDRNW DGDTSQERAW SEVFTTDERR DLLQATLSQF SERDNGPENS VGDLHQDGTG NNSNETVIVE GQSVWPADNS RQSDGNQPET RFGGSRTRRV
501: VPMRRLNRLH LPDDDSVNNS IELRELLSRR SVSNLLRSGF RENLDQLIQS YVERRGGGLA HIDWDFQPET LDSQEHRREQ QGFLQVEDQL DGINQSQTLP
601: APPMPPPQPI WHHTSYARSL HRSEFEWETM NDLRGDMARL QQGMSHMQRT LETCMDMQSE LQRLVRQEVS AALNQSPSDK GLGPGTSEDG SRWAHVRNGT
701: CCVCCDADID ALLYRCGHMC TCSKCGYELV RTGGKCPLCR APILEVIRAY SIA
101: SELIAIAGLH AVSTLDSSFL REETPRTQAS PPTSSGRAPE RPRPRTQASG ILQMWRELED EHSENGYGSS SREQSPDLGD VESERVRNIV RGLTTDHSSN
201: VRERSDDSRR GEWLGDTERE RVRIIREWMQ MTSQQRGGGG APQVQSEEGR REHTRRDLRR LRGRQALVDL LMRIERERQR ELQGLLEHRA VSDFAHRNRI
301: QSLLRGRFLR SETPSEEVRA PSVAASEIRQ LRERQTVSGL REGARDRPES NTNADNINTT RSNQITANTS EDSQLLNESL NSSRQGNGTP LLPNDLGNSG
401: SNQPNPDRNW DGDTSQERAW SEVFTTDERR DLLQATLSQF SERDNGPENS VGDLHQDGTG NNSNETVIVE GQSVWPADNS RQSDGNQPET RFGGSRTRRV
501: VPMRRLNRLH LPDDDSVNNS IELRELLSRR SVSNLLRSGF RENLDQLIQS YVERRGGGLA HIDWDFQPET LDSQEHRREQ QGFLQVEDQL DGINQSQTLP
601: APPMPPPQPI WHHTSYARSL HRSEFEWETM NDLRGDMARL QQGMSHMQRT LETCMDMQSE LQRLVRQEVS AALNQSPSDK GLGPGTSEDG SRWAHVRNGT
701: CCVCCDADID ALLYRCGHMC TCSKCGYELV RTGGKCPLCR APILEVIRAY SIA
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.