Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023148.1-P | Field mustard | nucleus | 80.09 | 78.16 |
| CDY09519 | Canola | nucleus | 59.45 | 57.04 |
| CDY52188 | Canola | nucleus | 48.4 | 48.61 |
| CDY12454 | Canola | nucleus | 42.73 | 45.58 |
| AT1G30860.1 | Thale cress | cytosol | 44.19 | 41.64 |
| CDY31650 | Canola | nucleus, plastid | 38.08 | 40.68 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 34.88 | 35.45 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 19.48 | 24.68 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 23.55 | 22.22 |
| KRH37161 | Soybean | nucleus | 28.34 | 21.15 |
| CDX96975 | Canola | cytosol | 21.08 | 21.11 |
| KRH12155 | Soybean | nucleus | 27.76 | 20.83 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 20.64 | 19.53 |
| CDY50063 | Canola | cytosol | 30.67 | 19.2 |
| CDX78978 | Canola | cytosol | 29.65 | 18.02 |
| CDY14941 | Canola | nucleus | 15.99 | 17.71 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 24.85 | 17.34 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 23.69 | 17.3 |
| PGSC0003DMT400035458 | Potato | nucleus | 25.87 | 17.2 |
| Solyc02g082100.2.1 | Tomato | vacuole | 25.58 | 16.33 |
| HORVU2Hr1G048520.1 | Barley | plastid | 15.12 | 16.17 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 17.01 | 15.83 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 15.99 | 14.99 |
| EER99396 | Sorghum | plastid | 16.57 | 14.77 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 16.57 | 14.75 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 16.13 | 14.66 |
| Zm00001d006417_P002 | Maize | plastid | 11.77 | 13.8 |
| Os07t0499800-01 | Rice | nucleus | 14.97 | 13.7 |
| CDY08599 | Canola | nucleus | 9.74 | 9.27 |
| CDY41355 | Canola | nucleus | 9.74 | 8.9 |
| CDY04520 | Canola | cytosol, plastid | 8.28 | 8.41 |
| CDY00948 | Canola | cytosol | 8.72 | 8.32 |
| CDX70223 | Canola | cytosol | 8.87 | 7.87 |
| CDY44857 | Canola | nucleus | 8.58 | 7.59 |
| CDX71406 | Canola | cytosol | 4.51 | 5.55 |
| Os03t0107500-00 | Rice | plasma membrane | 2.18 | 4.11 |
Protein Annotations
| EnsemblPlants:CDY02344 | EnsemblPlantsGene:GSBRNA2T00113828001 | Gene3D:3.30.40.10 | GO:A0A078ENS6 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY02344 | ProteinID:CDY02344.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EE1922 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA09g25580D
Coordinates
chrLK031933:-:783351..786063
Molecular Weight (calculated)
78431.7 Da
IEP (calculated)
5.189
GRAVY (calculated)
-0.982
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISSSSQRF GCILRDRNQN AFVCKKNLKA PVKDRHHHHH HHELFKSHVS DENSENLVDS WIETLNKKNN TNNGIGRKEK CDESKRNNGA SSLVQIWEAR
101: LNPSSGGNSP SHNQSTVASS IRGDSGDSVQ DSCFSESPSD ESEAENGHVE MESRSQGSVS DSGRVADLIR RLSNEKKLIA VGGGLSTIKT PRPYISSEKS
201: SFPLVSCSPR LRGRQAFTDL LMRMEQDRHR ELDSLHQRNA VSKFTQRGRL QSMLRLRNLK RCLAIQDQYR SNEKTTRLNR FEPGSAVLRL REKFRANAVN
301: ADTSKETEVA TERTGLKKGG INQEASFATA GTTLCKEEET VNRTVEANVD CLELQETRGA KTWNDNKFED KEEETSQSET PESTQNKLEI KMENCVQEAP
401: ETQGVGHESN EMDQCLEQQE TSYMNGWEEY EEEQYYYGEA NNDWLSEISR PRSYWEELRK SRYLEVMNTR SEKEDIRRLL ERRTVTDFLE SGLREEIDRL
501: MMSRVQTHSN KSCEKWEQEE EQNNEADEKE EPLTEGEEQD DRDDDSSRAS SHIFASSPAG SWSSQDTEVT SSTPVLSVHN SPSPEMELIS DMRAQIQQLH
601: QEMSLLRDSV KTCLDANASL QQSFHGENPM KRKCCVCDET QVEAVLYMCG HMCTCLKCAN ELHWSGGKCP ICRAQIMDVV RVFLDTRN
101: LNPSSGGNSP SHNQSTVASS IRGDSGDSVQ DSCFSESPSD ESEAENGHVE MESRSQGSVS DSGRVADLIR RLSNEKKLIA VGGGLSTIKT PRPYISSEKS
201: SFPLVSCSPR LRGRQAFTDL LMRMEQDRHR ELDSLHQRNA VSKFTQRGRL QSMLRLRNLK RCLAIQDQYR SNEKTTRLNR FEPGSAVLRL REKFRANAVN
301: ADTSKETEVA TERTGLKKGG INQEASFATA GTTLCKEEET VNRTVEANVD CLELQETRGA KTWNDNKFED KEEETSQSET PESTQNKLEI KMENCVQEAP
401: ETQGVGHESN EMDQCLEQQE TSYMNGWEEY EEEQYYYGEA NNDWLSEISR PRSYWEELRK SRYLEVMNTR SEKEDIRRLL ERRTVTDFLE SGLREEIDRL
501: MMSRVQTHSN KSCEKWEQEE EQNNEADEKE EPLTEGEEQD DRDDDSSRAS SHIFASSPAG SWSSQDTEVT SSTPVLSVHN SPSPEMELIS DMRAQIQQLH
601: QEMSLLRDSV KTCLDANASL QQSFHGENPM KRKCCVCDET QVEAVLYMCG HMCTCLKCAN ELHWSGGKCP ICRAQIMDVV RVFLDTRN
001: MVSSPQRFGL ILRDRNQNAG VFQKNLKSPV KEVLKSHVSD ENLVDSWIET HNNKNNRVLE SPLESKRNDN LVASSLVQIW EARLNRSNGG NSPSSSQSTA
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
Arabidopsis Description
At1g30860 [Source:UniProtKB/TrEMBL;Acc:Q6NQ80]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.