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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69885
CDX74944
CDX79746
CDX81140
CDX85794
CDX91373
CDX92192
CDX93360
CDX94448
CDY01102
CDY07779
CDY08455
CDY10786
CDY21607
CDY24750
CDY30296
CDY31972
CDY40061
CDY49616
CDY56544
CDY65255

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G09810.1 CDY10786 AT2G31200.1 21798944
AT5G09810.1 CDY24750 AT2G31200.1 21798944
AT5G09810.1 CDX74944 AT2G37620.1 21798944
AT5G09810.1 CDX79746 AT2G37620.1 21798944
AT5G09810.1 CDX91373 AT2G37620.1 21798944
AT5G09810.1 CDX93360 AT2G37620.1 21798944
AT5G09810.1 CDX94448 AT2G37620.1 21798944
AT5G09810.1 CDY07779 AT2G37620.1 21798944
AT5G09810.1 CDY65255 AT2G37620.1 21798944
AT5G09810.1 CDY01102 AT3G12110.1 21798944
AT5G09810.1 CDY08455 AT3G12110.1 21798944
AT5G09810.1 CDX92192 AT3G18060.1 21798944
AT5G09810.1 CDY49616 AT3G18060.1 21798944
AT5G09810.1 CDX69885 AT5G09810.1 21798944
AT5G09810.1 CDX81140 AT5G09810.1 21798944
AT5G09810.1 CDX85794 AT5G09810.1 21798944
AT5G09810.1 CDY21607 AT5G09810.1 21798944
AT5G09810.1 CDY30296 AT5G09810.1 21798944
AT5G09810.1 CDY31972 AT5G09810.1 21798944
AT5G09810.1 CDY40061 AT5G09810.1 21798944
AT5G09810.1 CDY56544 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX85794 Canola cytosol 100.0 100.0
CDY30296 Canola cytosol 99.43 99.43
CDY31972 Canola cytosol 99.43 99.43
GSMUA_Achr6P34320_001 Banana cytosol 66.86 96.72
CDX73527 Canola cytosol 95.18 95.18
CDX93360 Canola cytosol 88.95 94.86
CDY65255 Canola cytosol 88.67 94.56
Bra028615.1-P Field mustard cytosol 99.72 93.37
AT5G09810.1 Thale cress cytosol 99.43 93.1
CDX69885 Canola cytosol 99.43 93.1
CDY21607 Canola cytosol 99.43 93.1
CDX81140 Canola cytosol 98.87 92.57
CDY56544 Canola cytosol 98.87 92.57
HORVU5Hr1G117900.1 Barley cytosol 98.58 92.31
TraesCS5B01G516100.1 Wheat cytosol 98.58 92.31
TraesCS5D01G516200.1 Wheat cytosol 98.58 92.31
KRH64098 Soybean cytosol 98.3 92.04
Os11t0163100-01 Rice nucleus, plasma membrane, plastid 98.3 92.04
PGSC0003DMT400047481 Potato cytosol 98.3 92.04
Solyc03g078400.2.1 Tomato nucleus, plastid 98.3 92.04
TraesCS4A01G356100.2 Wheat cytosol 98.58 91.82
EES08028 Sorghum cytosol 97.73 91.51
KRH43389 Soybean cytosol 97.73 91.51
KRH59535 Soybean cytosol 97.73 91.51
KXG23031 Sorghum cytosol 97.73 91.51
PGSC0003DMT400010174 Potato cytosol 97.73 91.51
Solyc11g005330.1.1 Tomato nucleus 97.73 91.51
TraesCS5B01G124100.1 Wheat cytosol 97.73 91.51
KRH53856 Soybean endoplasmic reticulum, mitochondrion 85.84 91.27
GSMUA_Achr6P25350_001 Banana cytosol 97.45 91.25
Zm00001d053177_P004 Maize cytosol 97.45 91.25
GSMUA_Achr9P03170_001 Banana cytosol 97.17 91.22
Os03t0836000-01 Rice plasma membrane, plastid 97.17 90.98
Os05t0106600-01 Rice nucleus 97.17 90.98
GSMUA_Achr3P02960_001 Banana cytosol 96.88 90.72
GSMUA_Achr8P16150_001 Banana cytosol 96.88 90.72
KXG21029 Sorghum cytosol 96.88 90.72
TraesCS1B01G024500.1 Wheat golgi, nucleus 96.88 90.72
TraesCS1D01G020000.1 Wheat cytosol 96.88 90.72
Zm00001d011086_P005 Maize cytosol 96.88 90.72
Zm00001d035720_P002 Maize cytosol 96.88 90.72
GSMUA_Achr9P08850_001 Banana cytosol 89.52 90.54
GSMUA_Achr5P29190_001 Banana cytosol 89.24 90.52
EER90564 Sorghum cytosol 96.6 90.45
GSMUA_Achr2P16160_001 Banana cytosol 96.6 90.45
GSMUA_Achr10P... Banana cytosol 96.32 90.19
GSMUA_Achr7P10410_001 Banana cytosol 96.03 89.92
GSMUA_Achr8P02660_001 Banana cytosol 96.03 89.92
Os01t0964133-01 Rice plasma membrane 96.03 89.92
GSMUA_Achr11P... Banana cytosol 88.39 89.4
CDY01102 Canola cytosol 95.47 89.39
CDX78202 Canola cytosol 95.18 89.12
CDY08455 Canola cytosol 95.18 89.12
CDX76191 Canola cytosol 94.9 88.86
Zm00001d035722_P007 Maize plasma membrane 96.88 88.83
CDY48688 Canola cytosol 85.55 88.82
CDX74944 Canola cytosol 94.62 88.59
CDX87810 Canola cytosol 94.62 88.59
CDX91373 Canola cytosol 94.62 88.59
GSMUA_Achr11P... Banana cytosol 94.62 88.59
CDX71119 Canola cytosol 94.33 88.33
CDX82985 Canola cytosol 94.33 88.33
CDX86081 Canola cytosol 94.33 88.33
CDX88698 Canola cytosol 94.33 88.33
CDX99111 Canola cytosol 94.33 88.33
CDY21777 Canola cytosol 94.33 88.33
CDY30846 Canola cytosol 94.33 88.33
CDY38066 Canola cytosol 94.33 88.33
CDY53444 Canola cytosol 94.05 88.06
CDY07779 Canola cytosol 87.54 87.78
Os05t0438800-01 Rice plasma membrane, plastid 93.48 87.77
Zm00001d012277_P001 Maize cytosol 93.48 87.77
TraesCS5D01G132200.1 Wheat golgi 92.07 87.6
EES01810 Sorghum cytosol 93.2 87.5
HORVU1Hr1G074350.1 Barley cytosol 93.2 87.5
TraesCS1A01G274400.1 Wheat golgi 93.2 87.5
TraesCS1B01G283900.1 Wheat cytosol 93.2 87.5
TraesCS1D01G274400.1 Wheat cytosol 93.2 87.5
Zm00001d034761_P002 Maize cytosol 96.6 86.99
EES19603 Sorghum cytosol 92.63 86.97
Zm00001d042731_P002 Maize extracellular, plasma membrane, plastid 92.63 86.97
Zm00001d010159_P002 Maize extracellular, plasma membrane 92.35 86.7
CDX82326 Canola cytosol 92.07 86.21
CDX92272 Canola cytosol 91.78 85.94
CDX95498 Canola cytosol 91.78 85.94
CDY18545 Canola cytosol 91.78 85.94
CDY61982 Canola cytosol 91.78 85.94
CDX99315 Canola cytosol 77.62 84.83
Zm00001d008746_P001 Maize cytosol 66.01 84.73
TraesCS5A01G124300.2 Wheat golgi 97.73 84.35
CDX92271 Canola cytosol 75.64 84.23
HORVU1Hr1G002840.6 Barley plasma membrane 96.88 84.03
TraesCS1A01G020500.2 Wheat cytosol 96.88 84.03
CDX94448 Canola cytosol 92.07 83.98
CDX79746 Canola cytosol 87.54 83.06
Zm00001d016508_P001 Maize cytosol 31.16 79.71
GSMUA_Achr2P08030_001 Banana cytosol 78.75 79.43
KXG21030 Sorghum cytosol 86.97 78.92
GSMUA_Achr10P... Banana cytosol 61.19 78.55
Zm00001d019635_P001 Maize cytosol 30.59 78.26
Zm00001d016605_P001 Maize cytosol 34.84 77.85
Zm00001d019396_P001 Maize cytosol 36.54 76.79
VIT_04s0044g00580.t01 Wine grape extracellular 98.58 75.65
Zm00001d011087_P001 Maize plastid 96.88 75.33
CDY71336 Canola cytosol 58.07 74.55
CDY14813 Canola cytosol 71.39 71.79
Zm00001d007792_P001 Maize cytosol 52.97 70.83
HORVU5Hr1G039850.3 Barley mitochondrion 93.2 70.75
CDY06885 Canola cytosol 66.01 70.39
Zm00001d003298_P001 Maize cytosol 50.42 67.68
CDX67573 Canola cytosol 54.96 63.82
Zm00001d004087_P001 Maize cytosol 37.39 61.11
Os01t0866100-01 Rice plasma membrane 33.99 59.11
Zm00001d004855_P002 Maize cytoskeleton, cytosol, nucleus 96.32 57.63
CDY33033 Canola nucleus 77.05 50.28
CDX80274 Canola nucleus 75.64 48.63
CDY00172 Canola cytosol 46.18 41.9
CDY20066 Canola cytosol 46.18 41.9
CDY13674 Canola cytosol 46.46 41.52
CDY52404 Canola cytosol 46.46 41.52
CDX67843 Canola cytosol 39.09 38.33
CDY56730 Canola cytosol 39.09 38.33
CDX71774 Canola cytosol 38.53 38.1
CDY62715 Canola cytosol 38.81 37.74
CDX96721 Canola cytosol 45.04 36.3
CDX83847 Canola cytosol 45.04 36.22
CDY19213 Canola cytosol 45.04 35.97
CDY26159 Canola cytosol 45.04 35.97
CDY52344 Canola cytosol 39.38 34.49
CDY21087 Canola cytosol 38.81 32.08
CDY34585 Canola cytosol 38.53 31.85
Zm00001d034421_P004 Maize plastid 42.21 31.84
CDX98005 Canola cytosol 38.24 31.62
CDY19392 Canola cytosol 37.96 31.38
CDY42404 Canola cytosol 33.71 27.87
Protein Annotations
EnsemblPlants:CDY40061EnsemblPlantsGene:GSBRNA2T00068966001Gene3D:3.30.420.40Gene3D:3.90.640.10GO:A0A078DBS4InterPro:Actin
InterPro:Actin/actin-like_CSInterPro:Actin_CSPANTHER:PTHR11937PANTHER:PTHR11937:SF252PFAM:PF00022PRINTS:PR00190
ProteinID:CDY40061ProteinID:CDY40061.1ScanProsite:PS00432ScanProsite:PS01132SMART:SM00268SUPFAM:SSF53067
UniParc:UPI0004EEADB2UniProt:A0A078DBS4MapMan:20.2.1:::
Description
BnaC02g00690DBnaA02g00190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DBS4]
Coordinates
chrLK032463:+:22947..25266
Molecular Weight (calculated)
39147.0 Da
IEP (calculated)
5.026
GRAVY (calculated)
-0.157
Length
353 amino acids
Sequence
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMYPIE HGIVSNWDDM EKIWHHTFYN ELRVAPEEHP VLLTEAPLNP KANREKMTQI
101: MFETFNVPAM YVAIQAVLSL YASGRTTGIV LDSGDGVSHT VPIYEGYALP HAILRLDLAG RDLTDSLMKI LTERGYMFTT TAEREIVRDI KEKLAYVALD
201: YEQELETAKS SSSVEKNYEL PDGQVITIGA ERFRCPEVLF QPSLVGMEAP GIHETTYNSI MKCDVDIRKD LYGNIVLSGG STMFPGIADR MSKEITALAP
301: SSMKIKVVAP PERKYSVWIG GSILASLSTF QQMWISKGEY DESGPSIVHR KCF
Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.