CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74944
CDX79746
CDX91373
CDX93360
CDX94448
CDY07779
CDY65255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	CDX74944	AT2G37620.1	21798944
AT3G18060.1	CDX79746	AT2G37620.1	21798944
AT3G18060.1	CDX91373	AT2G37620.1	21798944
AT3G18060.1	CDX93360	AT2G37620.1	21798944
AT3G18060.1	CDX94448	AT2G37620.1	21798944
AT3G18060.1	CDY07779	AT2G37620.1	21798944
AT3G18060.1	CDY65255	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92192	Canola	cytosol	98.03	91.78
AT3G18060.1	Thale cress	cytosol	90.68	83.09
VIT_17s0000g02670.t01	Wine grape	cytosol	78.14	71.59
Solyc03g119090.2.1	Tomato	cytosol, extracellular	75.99	69.62
PGSC0003DMT400014412	Potato	cytosol	75.99	69.62
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	75.45	69.02
KRH60498	Soybean	cytosol	75.09	68.69
GSMUA_Achr10P...	Banana	cytosol	73.3	67.16
GSMUA_Achr3P20980_001	Banana	cytosol	67.92	65.23
Zm00001d014053_P001	Maize	cytosol	30.65	65.02
Zm00001d040038_P001	Maize	cytosol, extracellular	67.92	62.13
Zm00001d042097_P001	Maize	cytosol	7.89	61.97
Os01t0125800-01	Rice	plasma membrane	67.56	61.8
TraesCS3B01G034400.1	Wheat	cytosol, golgi	67.38	61.64
TraesCS3D01G031900.1	Wheat	cytosol	67.2	61.48
CDY25939	Canola	cytosol	67.56	61.1
CDY41077	Canola	cytosol	67.38	60.94
HORVU3Hr1G004510.1	Barley	cytosol	66.67	60.88
TraesCS3A01G047800.1	Wheat	cytosol	66.13	60.49
HORVU3Hr1G021490.1	Barley	cytosol	4.66	60.47
Zm00001d008517_P001	Maize	cytosol	68.1	59.56
Zm00001d008768_P001	Maize	cytosol	17.92	57.8
Zm00001d038078_P001	Maize	cytosol	17.92	57.8
Zm00001d047714_P001	Maize	plasma membrane	30.65	57.58
KXG32003	Sorghum	cytosol	68.28	56.61
Zm00001d029295_P001	Maize	cytosol	9.14	32.08

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078II14	EnsemblPlants:CDY49616	ProteinID:CDY49616	ProteinID:CDY49616.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00093466001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856
PANTHER:PTHR19856:SF4	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF50998	UniParc:UPI0004EF2F25
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaCnng17680DBnaCnng17680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078II14]

Coordinates

chrLK032848:-:1646..4746

Molecular Weight (calculated)

60491.6 Da

IEP (calculated)

5.957

GRAVY (calculated)

-0.144

Length

558 amino acids

Sequence
(BLAST)

001: MTLAETYACV PSTEREHAYP ATVARYSPNG EWIASGDVSG TVRIWGARDD HVLKKEFKVL AGRIDDLQWS ADGMRIVASG DGKGKSLVRA FMWDSGSNVG
101: EFDGHSRRVL SCAFKPTRPF RIVTCGEDFL VNFYEGPPFK FKLSSREHSN FVNCVRYSPD GSKFITTCEK LGELSPEDVH KGSIYAVSWS PDGKEVLTVS
201: ADKSAKVWEI SDSGNGTLKT TLTCPGSSGG VDDMLVGCLW QNDHIVTVSL GGTISIFSAS DLDKSPFQFS GHMKNISSLS VLRGSSDYIL SGSYDGLICK
301: WMMGRGFCGK LQRKQNSQIK CFAAHEEEII TSGFDNTISR IAYQDGQCTN EESIGVGNQP NDLSLAPLSP GLLLVAFESG VVFLRGEKVV STINLGFTVT
401: ALAVTPDGTE AIVGGQDGKL RLYAVNGDSL TEEAVLEKHR GAISVIRYSP DLSMFASADL NREAVVWDRA SREMKLKNML YHSARINCLA WSPNSSMVAT
501: GSLDTCVIVY EVDKPASTRM TIKGAHLGGV YGLGFADDTH VVSSGEDACI RVWSLTPQ

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.