CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41077	Canola	cytosol	99.51	99.51
AT2G01330.1	Thale cress	cytosol	90.44	91.33
KRG90988	Soybean	cytosol	68.4	69.18
GSMUA_Achr10P...	Banana	cytosol	66.77	67.65
CDX92192	Canola	cytosol	65.32	67.62
CDY49616	Canola	cytosol	61.1	67.56
GSMUA_Achr3P20980_001	Banana	cytosol	63.37	67.3
KRH35765	Soybean	golgi	46.68	66.06
Zm00001d014053_P001	Maize	cytosol	27.55	64.64
Os01t0125800-01	Rice	plasma membrane	62.07	62.79
Zm00001d008768_P001	Maize	cytosol	17.5	62.43
Zm00001d038078_P001	Maize	cytosol	17.5	62.43
Zm00001d040038_P001	Maize	cytosol, extracellular	61.59	62.3
HORVU3Hr1G004510.1	Barley	cytosol	61.1	61.7
TraesCS3A01G047800.1	Wheat	cytosol	60.78	61.48
TraesCS3B01G034400.1	Wheat	cytosol, golgi	60.45	61.15
TraesCS3D01G031900.1	Wheat	cytosol	60.45	61.15
Zm00001d008517_P001	Maize	cytosol	61.59	59.56
HORVU3Hr1G021490.1	Barley	cytosol	4.05	58.14
Zm00001d047714_P001	Maize	plasma membrane	27.88	57.91
KXG32003	Sorghum	cytosol	61.43	56.31
Zm00001d042097_P001	Maize	cytosol	6.32	54.93
Zm00001d029295_P001	Maize	cytosol	7.78	30.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078GL10	EnsemblPlants:CDY25939	ProteinID:CDY25939	ProteinID:CDY25939.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00033441001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856
PANTHER:PTHR19856:SF4	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE8C2E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

BnaC09g20480DBnaC09g20480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL10]

Coordinates

chrLK032183:+:174409..177549

Molecular Weight (calculated)

67147.7 Da

IEP (calculated)

6.411

GRAVY (calculated)

-0.158

Length

617 amino acids

Sequence
(BLAST)

001: MAKLVETFPC VPSTERGRGI LISGDPKSDT ILYCNGRSVL IRSLQRPQDV EVYGEHGYAA TVARYSPNGE WIASADVSGT VRVWGTHNGF VLKNEFRVLA
101: GRIDDLQWSS DCLRIVASGD GKGKSLVRAF AWDSGNTMGD FDGHSRRVLS CAFKPTRPFR IATCGEDFLV NFYDGPPFKF HSSHRQVTPW EHSNFVNCIR
201: YAPDGSKFIT VSSDKKGMIY DGKTGDKIGE LASEDGHKGS IYAVSWSPDS KRVLTVSADK SAKIWEISED GTAGSVIKTL TFTESGGAED MLVGCLWQNN
301: HLITVSLGGT MSLFSADDMD KPPLLLSGHI KNVTSLAVLG GNQKTILSCS YDGLIVKWLQ GVGYSCKLQM KDNTKIKRLA AIESNILLTG FDNKVWRMPL
401: TDNGFGAADH VDIGNQPLDI SIAVDTPEYT TLVSFESGVV LLNGLSILSK IDLGFVVAAS VISPDGKEAI VGGQDGKIHM YSVSEDNSLK EEAVLEKHRG
501: AVTVIRYSPD LTMFASGDAN REAVVWDRET KQVKLNNMLF HTARINSLAW SPNNKMVATG SVDTNVIVYE VDKPASSRIT VRHAHLGGVN AVAFVDECTV
601: ASSGEDASVR MWHIEPQ

Best Arabidopsis Sequence Match ( AT2G01330.1 )
(BLAST)

001: MAKLLETFPC VPSTERGRGI LISGDSKSDT ILYCNGRSVF IRSLRQLQDV QVYGEHGYAV TVARYSPNGE WIASADVSGT VRVWGTHNGF VLKNEFRVLA
101: GRVDDLQWSF DGLRIVASGD GKGKSLVRSF AWDSGNTMGD FDGHSRRVLS CAFKPTRPFR IATCGEDFLV NFYDGPPFKF HSSHREHSNF VNCIRYSPDG
201: TKFITVSSDK KGMIYDGKTG DKVGELASED GHKGSIYAVS WSPDSKRVLT VSADKSAKVW EVAEDGTIGS VIKTLSFMES GGAEDMLVGC LWQNDHLITV
301: SLGGTMSLFS ADDMDKPPLL LSGHIKNVTS LAVLGENQKT ILSCSYDGLI VKWLKGVGYS CKLQMKDTKI KRLAATESSI FISGYDNMVW RIPLTDNGYG
401: AAEHVDIGHQ PLDISIAVDS PEATALVSFD SGVVLLNGLN ILSKIDLGFA VAASVISPDG KEAIVGGQDG KLHIYSVSGD NNLKEEAVLE KHRGALTVIR
501: YSPDLTMFAS GDANREAVVW DRETKQVKLN NMLFHTARIN SLAWSPNNKM VATGSIDTCV IVYEVDKPAS SRITARNAHL GGVNAVAFID DCTVASSGED
601: ASVRLWHIEP Q

Arabidopsis Description

AIP1-1Actin-interacting protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.