Factsheet for TraesCS3B01G034400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G031900.1	Wheat	cytosol	99.02	99.02
TraesCS3A01G047800.1	Wheat	cytosol	97.38	97.38
HORVU3Hr1G004510.1	Barley	cytosol	97.05	96.89
Os01t0125800-01	Rice	plasma membrane	88.03	88.03
Zm00001d040038_P001	Maize	cytosol, extracellular	86.07	86.07
Zm00001d014053_P001	Maize	cytosol	36.39	84.41
Zm00001d008517_P001	Maize	cytosol	85.9	82.13
HORVU3Hr1G021490.1	Barley	cytosol	5.57	79.07
KXG32003	Sorghum	cytosol	86.23	78.16
Zm00001d047714_P001	Maize	plasma membrane	37.38	76.77
Zm00001d008768_P001	Maize	cytosol	21.48	75.72
Zm00001d038078_P001	Maize	cytosol	21.48	75.72
GSMUA_Achr10P...	Banana	cytosol	73.44	73.56
VIT_17s0000g02670.t01	Wine grape	cytosol	70.82	70.94
GSMUA_Achr3P20980_001	Banana	cytosol	66.56	69.88
Solyc03g119090.2.1	Tomato	cytosol, extracellular	68.52	68.64
PGSC0003DMT400014412	Potato	cytosol	68.2	68.31
CDY49616	Canola	cytosol	61.64	67.38
KRH60498	Soybean	cytosol	67.38	67.38
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	67.21	67.21
KRG90988	Soybean	cytosol	67.21	67.21
Bra022278.1-P	Field mustard	cytosol	66.23	66.34
AT3G18060.1	Thale cress	cytosol	66.07	66.17
CDX92192	Canola	cytosol	64.26	65.77
KRH35765	Soybean	golgi	46.23	64.68
AT2G01330.1	Thale cress	cytosol	62.62	62.52
CDY25939	Canola	cytosol	61.15	60.45
CDY41077	Canola	cytosol	60.66	59.97
Bra017456.1-P	Field mustard	cytosol	60.66	59.97

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19856	PANTHER:PTHR19856:SF4	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS3B01G034400	EnsemblPlants:TraesCS3B01G034400.1
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200

Description

No Description!

Coordinates

chr3B:+:16439811..16444446

Molecular Weight (calculated)

65999.6 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.234

Length

610 amino acids

Sequence
(BLAST)

001: MAQLQETYAC SPATERGRGI LLAGDAKTET IAYCSGRSVI FRRLDAPLDA WAYTEHAYPT TVARFSPNGE WVASADASGC VRVWGRNGDR ALKAEFRPIS
101: GRVDDLRWSP DGMRIVVSGD GKGKSLVRAF MWDSGSTVGE FDGHSKRVLS CDFKPTRPFR IVTCGEDFLA NYYEGPPFKF KHSIRDHTNF VNCIRYSPDG
201: TKFITVSSDK KGLIYDGKTG DKIGELSSEG SHTGSIYAVS WSPDSKQVLT VSADKTAKVW DISEDGSGTL NRTLVCTGIG GVDDMLVGCL WQNDNLVTVS
301: LGGTFNVFSA SNPDKDPVSF AGHLKTASAL ALFPQSNPRT MLSTSYDGVI LKWIQGVGYG GRLIRKNNTQ IKCFVATEEE LITSGYDNKV FRIPVNGDQC
401: GDAESADVGG QPNALNIALQ QPEFALVTTD SAIVLLNKSN VTSTTKVSYT ITSSAVSPDG TEAIVGAQDG KLRIYSISGD TVTEEAVLEK HRGPITTIHY
501: SPDVSMFCSA DSNREAVAWD RATREVKVKN MLFHTARVNC LAWSPDSRFV ATGSLDTCAI IYDVDKPAAS RTTIKGAHLG GVHGISFADN DTLVTAGEDA
601: CIRVWKLTHQ

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.