Factsheet for Bra017456.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41077	Canola	cytosol	100.0	100.0
AT2G01330.1	Thale cress	cytosol	89.95	90.83
KRG90988	Soybean	cytosol	68.4	69.18
Bra022278.1-P	Field mustard	cytosol	66.94	67.82
GSMUA_Achr10P...	Banana	cytosol	66.45	67.32
GSMUA_Achr3P20980_001	Banana	cytosol	63.37	67.3
KRH35765	Soybean	golgi	46.52	65.83
Zm00001d014053_P001	Maize	cytosol	27.55	64.64
Zm00001d038078_P001	Maize	cytosol	17.67	63.01
Zm00001d008768_P001	Maize	cytosol	17.67	63.01
Os01t0125800-01	Rice	plasma membrane	61.59	62.3
Zm00001d040038_P001	Maize	cytosol, extracellular	61.43	62.13
HORVU3Hr1G004510.1	Barley	cytosol	60.62	61.21
TraesCS3A01G047800.1	Wheat	cytosol	60.29	60.98
TraesCS3D01G031900.1	Wheat	cytosol	59.97	60.66
TraesCS3B01G034400.1	Wheat	cytosol, golgi	59.97	60.66
Zm00001d008517_P001	Maize	cytosol	61.43	59.4
HORVU3Hr1G021490.1	Barley	cytosol	4.05	58.14
Zm00001d047714_P001	Maize	plasma membrane	27.88	57.91
KXG32003	Sorghum	cytosol	61.26	56.17
Zm00001d042097_P001	Maize	cytosol	6.32	54.93
Zm00001d029295_P001	Maize	cytosol	7.78	30.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra017456	EnsemblPlants:Bra017456.1	EnsemblPlants:Bra017456.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0030042
GO:GO:0051015	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DLS5	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002542350	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

AT2G01330 (E=6e-255) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA09:+:15548764..15551626

Molecular Weight (calculated)

67163.7 Da

IEP (calculated)

6.410

GRAVY (calculated)

-0.153

Length

617 amino acids

Sequence
(BLAST)

001: MAKLVETFPC VPSTERGRGI LISGDPKSDT ILYCNGRSVL IRSLQRPQDV EVYGEHGYAA TVARYSPNGE WIASADVSGT VRVWGTHNGF VLKNEFRVLA
101: GRIDDLQWSS DCLRIVASGD GKGKSLVRAF AWDSGNTMGD FDGHSRRVLS CAFKPTRPFR IATCGEDFLV NFYDGPPFKF HSSHRQVTPW EHSNFVNCIR
201: YAPDGSKFIT VSSDKKGMIY DGKTGDKIGE LATEDGHKGS IYAVSWSPDS KRVLTVSADK SAKIWEISED GTAGSVIKTL TFTESGGAED MLVGCLWQNN
301: HLITVSLGGT MSLFSADDMD KPPLLLSGHI KNVTSLAVLG GNQKTILSCS YDGLIVKWLQ GVGYSCKLQM KDNTKIKRLA AIDSNILLTG FDNKVWRMPL
401: TDNGFGAADH VDIGNQPLDI SIAVDTPEYT TLVSFESGVV LLNGLSILSK IDLGFVVAAS VISPDGKEAI VGGQDGKIHM YSVSEDNSLK EEAVLEKHRG
501: AVTVIRYSPD LTMFASGDAN REAVVWDRET KQVKLNNMLF HTARINSLAW SPNNKMVATG SVDTNVIVYE VDKPASCRIT VRHAHLGGVN AVAFVDECTV
601: ASSGEDASVR MWHIEPQ

Best Arabidopsis Sequence Match ( AT2G01330.1 )
(BLAST)

001: MAKLLETFPC VPSTERGRGI LISGDSKSDT ILYCNGRSVF IRSLRQLQDV QVYGEHGYAV TVARYSPNGE WIASADVSGT VRVWGTHNGF VLKNEFRVLA
101: GRVDDLQWSF DGLRIVASGD GKGKSLVRSF AWDSGNTMGD FDGHSRRVLS CAFKPTRPFR IATCGEDFLV NFYDGPPFKF HSSHREHSNF VNCIRYSPDG
201: TKFITVSSDK KGMIYDGKTG DKVGELASED GHKGSIYAVS WSPDSKRVLT VSADKSAKVW EVAEDGTIGS VIKTLSFMES GGAEDMLVGC LWQNDHLITV
301: SLGGTMSLFS ADDMDKPPLL LSGHIKNVTS LAVLGENQKT ILSCSYDGLI VKWLKGVGYS CKLQMKDTKI KRLAATESSI FISGYDNMVW RIPLTDNGYG
401: AAEHVDIGHQ PLDISIAVDS PEATALVSFD SGVVLLNGLN ILSKIDLGFA VAASVISPDG KEAIVGGQDG KLHIYSVSGD NNLKEEAVLE KHRGALTVIR
501: YSPDLTMFAS GDANREAVVW DRETKQVKLN NMLFHTARIN SLAWSPNNKM VATGSIDTCV IVYEVDKPAS SRITARNAHL GGVNAVAFID DCTVASSGED
601: ASVRLWHIEP Q

Arabidopsis Description

AIP1-1Actin-interacting protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.