Factsheet for Bra022278.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000010.1-P
Bra005178.1-P
Bra017166.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	Bra000010.1-P	AT2G37620.1	21798944
AT3G18060.1	Bra005178.1-P	AT2G37620.1	21798944
AT3G18060.1	Bra017166.1-P	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92192	Canola	cytosol	96.88	98.99
AT3G18060.1	Thale cress	cytosol	90.97	90.97
VIT_17s0000g02670.t01	Wine grape	cytosol	78.16	78.16
Solyc03g119090.2.1	Tomato	cytosol, extracellular	76.03	76.03
PGSC0003DMT400014412	Potato	cytosol	76.03	76.03
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	75.53	75.41
KRH60498	Soybean	cytosol	75.37	75.25
GSMUA_Achr10P...	Banana	cytosol	72.58	72.58
GSMUA_Achr3P20980_001	Banana	cytosol	68.31	71.6
Zm00001d014053_P001	Maize	cytosol	30.05	69.58
Bra017456.1-P	Field mustard	cytosol	67.82	66.94
Zm00001d040038_P001	Maize	cytosol, extracellular	67.0	66.89
Os01t0125800-01	Rice	plasma membrane	66.67	66.56
TraesCS3B01G034400.1	Wheat	cytosol, golgi	66.34	66.23
TraesCS3D01G031900.1	Wheat	cytosol	66.17	66.07
HORVU3Hr1G004510.1	Barley	cytosol	65.85	65.63
Zm00001d008768_P001	Maize	cytosol	18.55	65.32
Zm00001d038078_P001	Maize	cytosol	18.55	65.32
TraesCS3A01G047800.1	Wheat	cytosol	65.19	65.08
Zm00001d008517_P001	Maize	cytosol	67.16	64.11
Zm00001d047714_P001	Maize	plasma membrane	30.38	62.29
Zm00001d042097_P001	Maize	cytosol	7.22	61.97
KXG32003	Sorghum	cytosol	67.32	60.92
HORVU3Hr1G021490.1	Barley	cytosol	4.27	60.47
Zm00001d029295_P001	Maize	cytosol	8.7	33.33

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra022278	EnsemblPlants:Bra022278.1	EnsemblPlants:Bra022278.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4E0I1	InterPro:N2O_reductase_N
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4
SMART:SM00320	SUPFAM:SSF50974	SUPFAM:SSF50978	UniParc:UPI0002547374	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT3G18060 (E=0.0) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA05:-:18670569..18673347

Molecular Weight (calculated)

66000.2 Da

IEP (calculated)

6.072

GRAVY (calculated)

-0.135

Length

609 amino acids

Sequence
(BLAST)

001: MTLAETYACI PSTERGRGIL ISGDSKSDTM LYTNARSVVI LDLNNPLNVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGARDDHV LKKEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AFKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRYSPDGS
201: KFITVSSDKK GIIYDGKTCE KLGELSSEDV HKGSIYAVSW SPDGKEVLTV SADKSAKVWE ISDSGNGTLK TTLTCPGSLG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNISSL SVLRGSSDYI LSGSYDGLIC KWMMGRGFCG KLQRKQNSQI KCFAAHEEEI ITSGFDNTIS RISYQDGQVT
401: NEESIGVGNQ PNDLSLAPLS PGLLLVAFES GVVFLRGEKV VSTINLGFTV TALAVTPDGT EAIVGGQDGK LHLYSVNGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR ASREMKLKNM LYHSARINCL AWSPNSSMVA TGSLDTCVIV YEVDKPASTR MTIKGAHLGG VYGLGFADDT HVVSSGEDAC
601: IRVWSLTPQ

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.