Factsheet for GSMUA_Achr10P19980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P18630_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	GSMUA_Achr10P...	AT2G37620.1	21798944
AT3G18060.1	GSMUA_Achr7P18630_001	AT2G37620.1	21798944
AT3G18060.1	GSMUA_AchrUn_...	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20980_001	Banana	cytosol	81.94	85.89
VIT_17s0000g02670.t01	Wine grape	cytosol	77.83	77.83
PGSC0003DMT400014412	Potato	cytosol	76.52	76.52
Solyc03g119090.2.1	Tomato	cytosol, extracellular	76.03	76.03
Zm00001d040038_P001	Maize	cytosol, extracellular	75.7	75.57
Os01t0125800-01	Rice	plasma membrane	75.53	75.41
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	74.71	74.59
Zm00001d014053_P001	Maize	cytosol	32.18	74.52
KRH60498	Soybean	cytosol	74.38	74.26
HORVU3Hr1G004510.1	Barley	cytosol	73.89	73.65
TraesCS3B01G034400.1	Wheat	cytosol, golgi	73.56	73.44
CDY49616	Canola	cytosol	67.16	73.3
TraesCS3D01G031900.1	Wheat	cytosol	73.4	73.28
TraesCS3A01G047800.1	Wheat	cytosol	73.23	73.11
KRG90988	Soybean	cytosol	72.74	72.62
Bra022278.1-P	Field mustard	cytosol	72.58	72.58
AT3G18060.1	Thale cress	cytosol	72.25	72.25
CDX92192	Canola	cytosol	70.28	71.81
Zm00001d008517_P001	Maize	cytosol	75.04	71.63
Zm00001d008768_P001	Maize	cytosol	19.87	69.94
Zm00001d038078_P001	Maize	cytosol	19.87	69.94
KRH35765	Soybean	golgi	49.43	69.04
KXG32003	Sorghum	cytosol	75.86	68.65
AT2G01330.1	Thale cress	cytosol	68.47	68.25
Zm00001d047714_P001	Maize	plasma membrane	32.68	67.0
CDY25939	Canola	cytosol	67.65	66.77
CDY41077	Canola	cytosol	67.32	66.45
Bra017456.1-P	Field mustard	cytosol	67.32	66.45
HORVU3Hr1G021490.1	Barley	cytosol	4.43	62.79
Zm00001d042097_P001	Maize	cytosol	7.06	60.56
Zm00001d029295_P001	Maize	cytosol	9.2	35.22

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G19980_001
EnsemblPlants:GSMUA_Achr10P19980_001	EnsemblPlants:GSMUA_Achr10T19980_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RJS3
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029498B7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

Putative 66 kDa stress protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G19980_001]

Coordinates

chr10:+:26143317..26151089

Molecular Weight (calculated)

65848.1 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.127

Length

609 amino acids

Sequence
(BLAST)

001: MAQLSETYAC VPATERGRGI LIAGDARSDS IAYCNGRSVI IRRLDAPLEA TIYGEHAYQV TVARFSPNGE WVASADVSGT VRIWGRHGDR ALKNEFRVLS
101: GRVDDLQWSP DGLRIVACGD GKGKSFVRAF MWDSGTNVGE FDGHSRRVLS CAFKPTRPFR IVTCGEDFLV NFYEGPPFKF KLSQREHSNF VNCARFSPDG
201: SKFITVSSDK KGILYDGKTG EKIGELSIQD GHKGSIYAVS WSPDSKQVLT VSADKTAKVW DIMEDGCGKL RRTLASPGSG GVDDMLVGCL WQNDHLVTVS
301: LGGTMTIFSA SDPDKSPVSF SGHMKSITSL VFLQSGQNVI LSSSYDGIIT RWIRGIGYAG KLVRKDSTQI KCFAAAEEEI ITSGFDNKVW RVPVNGDQCG
401: DSQPVDVGSQ PMGLTVAAQT PELAIVSTDS GVVLLQGPKV VSQIKLGYAV TTSAISPDGN EVIVGGQDGK LHIYSVNGDT LTEEAILEKH RGTITAICYS
501: PDASMFASAD ANREAVVWDR ISREVKLKNM LYHTARINCL AWSPDSHLIA TGSLDTSVIV YEVDKPASSR ITIKGAHLGG VYGLAFIDEN SLVSAGEDAC
601: VRVWKLLPQ

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.