Factsheet for GSMUA_Achr3P20980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P18630_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18060.1	GSMUA_Achr10P...	AT2G37620.1	21798944
AT3G18060.1	GSMUA_Achr7P18630_001	AT2G37620.1	21798944
AT3G18060.1	GSMUA_AchrUn_...	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	85.89	81.94
VIT_17s0000g02670.t01	Wine grape	cytosol	76.25	72.74
PGSC0003DMT400014412	Potato	cytosol	75.04	71.59
KRH41795	Soybean	cytosol, endoplasmic reticulum, nucleus	74.7	71.15
Zm00001d014053_P001	Maize	cytosol	32.19	71.1
Solyc03g119090.2.1	Tomato	cytosol, extracellular	74.35	70.94
KRH60498	Soybean	cytosol	74.18	70.66
Zm00001d040038_P001	Maize	cytosol, extracellular	72.81	69.34
Zm00001d038078_P001	Maize	cytosol	20.48	68.79
Zm00001d008768_P001	Maize	cytosol	20.48	68.79
Os01t0125800-01	Rice	plasma membrane	72.12	68.69
Bra022278.1-P	Field mustard	cytosol	71.6	68.31
CDY49616	Canola	cytosol	65.23	67.92
AT3G18060.1	Thale cress	cytosol	71.08	67.82
CDX92192	Canola	cytosol	69.19	67.45
TraesCS3B01G034400.1	Wheat	cytosol, golgi	69.88	66.56
TraesCS3D01G031900.1	Wheat	cytosol	69.88	66.56
TraesCS3A01G047800.1	Wheat	cytosol	69.71	66.39
HORVU3Hr1G004510.1	Barley	cytosol	69.71	66.28
KRG90988	Soybean	cytosol	69.54	66.23
Zm00001d008517_P001	Maize	cytosol	72.12	65.67
HORVU3Hr1G021490.1	Barley	cytosol	4.82	65.12
Zm00001d047714_P001	Maize	plasma membrane	33.05	64.65
AT2G01330.1	Thale cress	cytosol	67.3	63.99
KRH35765	Soybean	golgi	48.02	63.99
CDY41077	Canola	cytosol	67.3	63.37
CDY25939	Canola	cytosol	67.3	63.37
Bra017456.1-P	Field mustard	cytosol	67.3	63.37
KXG32003	Sorghum	cytosol	72.98	63.0
Zm00001d042097_P001	Maize	cytosol	7.23	59.15
Zm00001d029295_P001	Maize	cytosol	9.29	33.96

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G20980_001
EnsemblPlants:GSMUA_Achr3P20980_001	EnsemblPlants:GSMUA_Achr3T20980_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0SGG4
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19856	PANTHER:PTHR19856:SF4
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	SUPFAM:SSF69322	UniParc:UPI000295C606	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	:	:	:

Description

Putative 66 kDa stress protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G20980_001]

Coordinates

chr3:-:22043665..22049248

Molecular Weight (calculated)

62804.7 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.098

Length

581 amino acids

Sequence
(BLAST)

001: MAMAHLAETY ACVPATERGR GILISGDPRS DTIAYCNGRS VIIQQLGAPL EVSIYGEHAY QATVVRFSPN GEWVATADWS PDGLRIVACG DGKGKSFVRA
101: FMWDSGTNVG EFDGHSRRVL SCAFKPTRPY RIVTCGEDFL VNFYEGPPFK FKLSHREHSN FVNCVRFSPD GSKFITVSSD KKGLIYDGKT GEKIGELPME
201: DGHKGSIYAG SWSPDSKQVL TVSADKTAKV WEIMEDGCGK LRRTLECPGS GGVDDMLVGC LWQNDYLVIV SLGGTITIFS ASDLEKSPVS FSGHMKSITS
301: LVCLLQGGQK VFLSSSYDGI ITRWIQGTGY VGKLVRKGSS QIKCLAAVGE EIMTSGFDNK VWRVPLNDDQ CGDTEPVDVG SQPRGIAVAL QIPELALVSI
401: DSGVVMLRGL KVISETKLGY AVTTSAISPD GTEAVVGAED GKLHIYSITG DALTEEAVLE KHRGTITAIC YSPDASMFAS ADSNREAVVW DRESREVKLK
501: NMLYHTARIN CLAWSPDNHL IATGSLDTSV IVYELDKPAS NRITIKGAHL GGVYGVAFGD ENSLISAGED ACVRVWKIEP Q

Best Arabidopsis Sequence Match ( AT3G18060.1 )
(BLAST)

001: MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG
101: RIDDLQWSAD GMRIVASGDG KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK LSSREHSNFV NCVRFAPDGS
201: KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301: LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT
401: NEESIDIGNQ PKDLSLAPLS PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS LTEEAVLERH RGAISVIRYS
501: PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601: IRVWSFTPQ

Arabidopsis Description

AIP1-2Actin-interacting protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.