Factsheet for GSMUA_Achr7P18630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P08220_001
GSMUA_Achr7P18630_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT2G37620.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944
AT2G37620.1	GSMUA_Achr10P...	AT2G37620.1	21798944
AT2G37620.1	GSMUA_Achr7P18630_001	AT2G37620.1	21798944
AT2G37620.1	GSMUA_AchrUn_...	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	81.88	99.62
GSMUA_Achr6P02480_001	Banana	cytosol	86.88	93.6
GSMUA_Achr2P15150_001	Banana	cytosol	93.12	85.39
GSMUA_Achr3P20240_001	Banana	cytosol	79.38	84.67
GSMUA_Achr9P08850_001	Banana	cytosol	92.19	84.53
GSMUA_Achr11P...	Banana	cytosol	91.88	84.24
GSMUA_Achr5P29190_001	Banana	cytosol	91.56	84.2
GSMUA_AchrUn_...	Banana	plasma membrane	94.38	80.11
VIT_06s0004g04570.t01	Wine grape	cytosol	94.06	80.05
AT2G37620.1	Thale cress	cytosol	93.44	79.31
AT3G53750.2	Thale cress	cytosol	93.44	79.31
KRH10268	Soybean	mitochondrion, nucleus	93.44	79.31
CDX91373	Canola	cytosol	93.12	79.05
CDX76191	Canola	cytosol	93.12	79.05
CDX74944	Canola	cytosol	93.12	79.05
GSMUA_Achr4P31250_001	Banana	cytosol	93.12	79.05
KRG95386	Soybean	cytosol	93.12	79.05
Bra014865.1-P	Field mustard	cytosol	93.12	79.05
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.12	79.05
KRH38098	Soybean	cytosol	93.12	79.05
VIT_08s0007g06520.t01	Wine grape	cytosol	93.12	79.05
KRG93168	Soybean	mitochondrion, nucleus	92.81	78.78
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	92.81	78.78
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	92.81	78.78
GSMUA_Achr3P02960_001	Banana	cytosol	92.81	78.78
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	92.81	78.78
KRH71847	Soybean	endoplasmic reticulum, nucleus	92.81	78.78
CDY30846	Canola	cytosol	92.81	78.78
VIT_13s0019g01240.t01	Wine grape	cytosol	92.81	78.78
Bra000010.1-P	Field mustard	cytosol	92.81	78.78
AT3G12110.1	Thale cress	cytosol	92.81	78.78
Bra007025.1-P	Field mustard	cytosol	92.81	78.78
CDX78202	Canola	cytosol	92.81	78.78
KRH70465	Soybean	mitochondrion, nucleus	92.5	78.51
CDY01102	Canola	cytosol	92.5	78.51
Bra017166.1-P	Field mustard	cytosol	92.5	78.51
KRH01660	Soybean	mitochondrion, nucleus	92.5	78.51
Bra034778.1-P	Field mustard	cytosol	92.5	78.51
GSMUA_Achr9P03170_001	Banana	cytosol	92.19	78.46
GSMUA_Achr6P25350_001	Banana	cytosol	92.19	78.25
CDY53444	Canola	cytosol	92.19	78.25
AT3G46520.2	Thale cress	cytosol	92.19	78.25
GSMUA_Achr8P02660_001	Banana	cytosol	92.19	78.25
CDX82985	Canola	cytosol	92.19	78.25
CDY08455	Canola	cytosol	92.19	78.25
GSMUA_Achr8P16150_001	Banana	cytosol	92.19	78.25
Bra033819.1-P	Field mustard	cytosol	92.19	78.25
Bra018210.1-P	Field mustard	cytosol	91.88	77.98
Bra019486.1-P	Field mustard	cytosol	91.88	77.98
CDX71119	Canola	cytosol	91.88	77.98
GSMUA_Achr2P16160_001	Banana	cytosol	91.88	77.98
CDX88698	Canola	cytosol	91.88	77.98
CDX99111	Canola	cytosol	91.88	77.98
CDY21777	Canola	cytosol	91.88	77.98
CDX86081	Canola	cytosol	91.88	77.98
CDY38066	Canola	cytosol	91.88	77.98
GSMUA_Achr10P...	Banana	cytosol	91.88	77.98
AT5G59370.2	Thale cress	cytosol	91.88	77.98
CDY07779	Canola	cytosol	85.62	77.84
PGSC0003DMT400023026	Potato	cytosol	91.56	77.72
Bra005178.1-P	Field mustard	cytosol	85.94	77.68
GSMUA_Achr7P10410_001	Banana	cytosol	91.25	77.45
CDX73527	Canola	cytosol	85.31	77.34
PGSC0003DMT400049429	Potato	cytosol	90.94	77.19
Solyc10g086460.1.1	Tomato	unclear	90.62	76.92
GSMUA_Achr1P05990_001	Banana	plasma membrane	90.62	76.92
GSMUA_Achr10P...	Banana	cytosol	78.75	76.6
GSMUA_Achr11P...	Banana	cytosol	90.0	76.39
CDY48688	Canola	cytosol	80.94	76.18
Bra020319.1-P	Field mustard	cytosol	80.94	76.18
CDX93360	Canola	cytosol	78.44	75.83
CDY65255	Canola	cytosol	78.44	75.83
Bra006719.1-P	Field mustard	cytosol	77.81	75.0
GSMUA_Achr10P...	Banana	cytosol	64.06	74.55
CDX94448	Canola	cytosol	90.0	74.42
GSMUA_Achr1P20200_001	Banana	cytosol	80.62	74.35
CDX79746	Canola	cytosol	85.62	73.66
Bra003156.1-P	Field mustard	cytosol	45.62	70.87
KRH24799	Soybean	cytosol	87.81	68.54
GSMUA_Achr6P34320_001	Banana	cytosol	51.25	67.21
GSMUA_Achr2P08030_001	Banana	cytosol	71.56	65.43
Solyc09g010750.1.1	Tomato	cytosol	33.12	59.22
CDX67573	Canola	cytosol	50.94	53.62
CDY71336	Canola	cytosol	45.0	52.36
Bra002571.1-P	Field mustard	nucleus	91.56	48.43
CDY33033	Canola	nucleus	79.69	47.13
CDX80274	Canola	nucleus	78.12	45.54
GSMUA_AchrUn_...	Banana	cytosol	43.44	35.73
GSMUA_Achr2P05970_001	Banana	cytosol	19.06	34.46
GSMUA_Achr6P21120_001	Banana	cytosol	38.44	28.81
GSMUA_Achr8P01270_001	Banana	cytosol	38.44	28.81
GSMUA_Achr9P07630_001	Banana	cytosol	38.44	28.74
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	25.31	27.84
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	39.38	26.64
GSMUA_AchrUn_...	Banana	cytosol	31.25	22.99
GSMUA_Achr2P05960_001	Banana	cytosol	21.56	22.55

Protein Annotations

EnsemblPlants:GSMUA_Achr7P18630_001	EnsemblPlants:GSMUA_Achr7T18630_001	EnsemblPlantsGene:GSMUA_Achr7G18630_001	Gene3D:3.30.420.40	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	PANTHER:PTHR11937
PANTHER:PTHR11937:SF355	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000295B344	UniProt:M0TIQ0	MapMan:35.1	:

Description

Actin-97 [Source:GMGC_GENE;Acc:GSMUA_Achr7G18630_001]

Coordinates

chr7:-:21409674..21412757

Molecular Weight (calculated)

35095.2 Da

IEP (calculated)

5.387

GRAVY (calculated)

-0.138

Length

320 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLADIKEKLA YIALDYEQEL
201: ETAKTNSSPS MIGMEAAGIH ETTYNSIMKC DVDIRKDLYG NIVLSGGSTM FSGIADRMSK EITALAPSSM KIKVVAPPER KYSVWIGGSI LASLSTFQQM
301: WIAKAEYDES GPSIVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.