Factsheet for GSMUA_AchrUn_randomP10660_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P05960_001
GSMUA_Achr2P05970_001
GSMUA_Achr6P21120_001
GSMUA_Achr8P01270_001
GSMUA_Achr9P07630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27000.1	GSMUA_Achr2P05960_001	AT1G13180.1	17267444
AT3G27000.1	GSMUA_Achr2P05970_001	AT1G13180.1	17267444
AT3G27000.1	GSMUA_Achr6P21120_001	AT1G13180.1	17267444
AT3G27000.1	GSMUA_Achr8P01270_001	AT1G13180.1	17267444
AT3G27000.1	GSMUA_Achr9P07630_001	AT1G13180.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022558_P001	Maize	cytosol	94.34	94.34
EER99952	Sorghum	cytosol	94.09	94.09
VIT_14s0068g01630.t01	Wine grape	cytosol	92.03	92.03
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.77	91.77
KRG94584	Soybean	cytosol	91.52	91.52
Solyc02g094320.2.1	Tomato	cytosol	91.26	91.26
KRH06905	Soybean	cytosol	91.26	91.26
Bra039097.1-P	Field mustard	cytosol	89.97	89.97
CDY20066	Canola	cytosol	89.97	89.97
AT3G27000.1	Thale cress	cytosol	89.72	89.72
CDY00172	Canola	cytosol	89.72	89.72
Bra025243.1-P	Field mustard	cytosol	84.32	89.62
TraesCS3A01G369400.1	Wheat	cytosol	91.26	88.75
CDY13674	Canola	cytosol	89.2	87.85
CDY52404	Canola	cytosol	88.95	87.59
TraesCS3B01G401300.2	Wheat	cytosol	91.0	85.1
PGSC0003DMT400052197	Potato	cytosol	86.89	84.71
HORVU4Hr1G007240.3	Barley	cytosol	88.95	73.77
GSMUA_Achr10P...	Banana	cytosol	33.16	46.91
GSMUA_Achr2P08030_001	Banana	cytosol	41.65	46.29
GSMUA_Achr8P02660_001	Banana	cytosol	44.73	46.15
GSMUA_Achr2P16160_001	Banana	cytosol	44.73	46.15
GSMUA_Achr7P10410_001	Banana	cytosol	44.47	45.89
GSMUA_AchrUn_...	Banana	plasma membrane	44.47	45.89
GSMUA_Achr10P...	Banana	cytosol	44.47	45.89
GSMUA_Achr1P05990_001	Banana	plasma membrane	44.47	45.89
GSMUA_Achr9P03170_001	Banana	cytosol	44.22	45.74
GSMUA_Achr3P02960_001	Banana	cytosol	44.22	45.62
GSMUA_Achr8P16150_001	Banana	cytosol	44.22	45.62
GSMUA_Achr11P...	Banana	cytosol	43.96	45.36
GSMUA_Achr3P20240_001	Banana	cytosol	34.96	45.33
GSMUA_Achr10P...	Banana	cytosol	38.3	45.29
GSMUA_Achr5P29190_001	Banana	cytosol	40.36	45.11
GSMUA_Achr6P25350_001	Banana	cytosol	43.7	45.09
GSMUA_Achr4P31250_001	Banana	cytosol	43.7	45.09
GSMUA_Achr1P20200_001	Banana	cytosol	40.1	44.96
GSMUA_Achr6P34320_001	Banana	cytosol	28.02	44.67
GSMUA_Achr9P08850_001	Banana	cytosol	39.85	44.41
GSMUA_Achr11P...	Banana	cytosol	39.59	44.13
GSMUA_Achr2P15150_001	Banana	cytosol	39.59	44.13
GSMUA_Achr7P18630_001	Banana	cytosol	35.73	43.44
GSMUA_Achr6P02480_001	Banana	cytosol	33.16	43.43
GSMUA_Achr10P...	Banana	cytosol	28.28	41.83
GSMUA_Achr8P01270_001	Banana	cytosol	34.19	31.15
GSMUA_Achr6P21120_001	Banana	cytosol	33.68	30.68
GSMUA_Achr2P05970_001	Banana	cytosol	13.88	30.51
GSMUA_Achr9P07630_001	Banana	cytosol	32.65	29.67
GSMUA_Achr2P05960_001	Banana	cytosol	22.11	28.1
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	20.57	27.49
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	30.85	25.37
GSMUA_AchrUn_...	Banana	cytosol	26.22	23.45

Protein Annotations

MapMan:20.2.2.1.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp2	GO:GO:0000166
GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653
GO:GO:0009825	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154
GO:GO:0034314	GO:GO:0040007	EnsemblPlantsGene:GSMUA_AchrUn_randomG10660_001	EnsemblPlants:GSMUA_AchrUn_randomP10660_001	EnsemblPlants:GSMUA_AchrUn_randomT10660_001	UniProt:M0U825
PFAM:PF00022	PRINTS:PR00190	PANTHER:PTHR11937	PANTHER:PTHR11937:SF149	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI0002958AC5	:	:	:	:	:

Description

Actin-related protein 2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10660_001]

Coordinates

chrchrUn_random:+:51929769..51941051

Molecular Weight (calculated)

44274.5 Da

IEP (calculated)

5.337

GRAVY (calculated)

-0.223

Length

389 amino acids

Sequence
(BLAST)

001: MDSRKVVVCD NGTGYVKCGF AEDNFPTSVF PCVVGRPMLR YEESLVEQEL TDIVVGAACA EFRHQLDISY PVNNGIVQNW DDMGHVWDHA FYSELKIDPS
101: ECKILLTDPP LNPSKNREKM IETMFEKYNF SGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITSYL VDLLSRRGYA
201: MNRSADFETV REIKEKLCYI SYDYKREYQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMAF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEILE RYLDVVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDTPEFWI TRQEYQEEGV ACLRKCGQV

Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)

001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA

Arabidopsis Description

ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.