Factsheet for TraesCS3B01G401300.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G211000.1
TraesCS6B01G240500.1
TraesCS6D01G194100.1
TraesCS7A01G311700.1
TraesCS7B01G211500.1
TraesCS7D01G308200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27000.1	TraesCS6A01G211000.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS6B01G240500.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS6D01G194100.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7A01G311700.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7B01G211500.1	AT1G13180.1	17267444
AT3G27000.1	TraesCS7D01G308200.1	AT1G13180.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G369400.1	Wheat	cytosol	95.43	99.25
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.14	96.4
Zm00001d022558_P001	Maize	cytosol	89.42	95.63
EER99952	Sorghum	cytosol	89.18	95.37
GSMUA_AchrUn_...	Banana	cytosol	85.1	91.0
VIT_14s0068g01630.t01	Wine grape	cytosol	82.45	88.17
KRG94584	Soybean	cytosol	81.49	87.15
KRH06905	Soybean	cytosol	81.25	86.89
Solyc02g094320.2.1	Tomato	cytosol	81.25	86.89
Bra039097.1-P	Field mustard	cytosol	80.53	86.12
CDY20066	Canola	cytosol	80.53	86.12
AT3G27000.1	Thale cress	cytosol	80.29	85.86
CDY00172	Canola	cytosol	80.29	85.86
Bra025243.1-P	Field mustard	cytosol	75.48	85.79
CDY13674	Canola	cytosol	80.29	84.56
CDY52404	Canola	cytosol	80.29	84.56
PGSC0003DMT400052197	Potato	cytosol	77.16	80.45
HORVU4Hr1G007240.3	Barley	cytosol	85.82	76.12
TraesCS5B01G124100.1	Wheat	cytosol	40.62	44.83
TraesCS1B01G024500.1	Wheat	golgi, nucleus	40.62	44.83
TraesCS5B01G516100.1	Wheat	cytosol	40.38	44.56
TraesCS1B01G201400.1	Wheat	cytosol	40.14	44.3
TraesCS1B01G283900.1	Wheat	cytosol	38.7	42.82
TraesCS4B01G050600.1	Wheat	cytosol	37.98	40.31
TraesCS3B01G410000.1	Wheat	cytosol	37.02	38.12
TraesCS6B01G240500.1	Wheat	cytosol	30.53	29.74
TraesCS5B01G358500.1	Wheat	cytosol	29.33	27.54
TraesCS5B01G422700.1	Wheat	cytosol	23.8	27.35
TraesCS7B01G211500.1	Wheat	cytosol	28.61	27.29
TraesCS6B01G189000.1	Wheat	cytosol	28.12	26.41
TraesCS2B01G597500.1	Wheat	cytosol	24.04	23.26
TraesCS1B01G333100.1	Wheat	cytosol	24.04	23.26

Protein Annotations

MapMan:20.2.2.1.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp2	GO:GO:0000166
GO:GO:0000902	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009653
GO:GO:0009825	GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154
GO:GO:0034314	GO:GO:0040007	PFAM:PF00022	PRINTS:PR00190	PANTHER:PTHR11937	PANTHER:PTHR11937:SF149
SMART:SM00268	SUPFAM:SSF53067	EnsemblPlantsGene:TraesCS3B01G401300	EnsemblPlants:TraesCS3B01G401300.2	TIGR:cd00012	:

Description

No Description!

Coordinates

chr3B:+:636107467..636119911

Molecular Weight (calculated)

47182.1 Da

IEP (calculated)

5.672

GRAVY (calculated)

-0.136

Length

416 amino acids

Sequence
(BLAST)

001: MWKSVGTSLV SLSYYRFFEK REILSVMVGW FCCSNLAPTL QYVKCGFAGE NFPTSVFPCV VGRPLLRYEE SLQEQELTDI VVGAACADLR HQLDVSYPVT
101: NGIVQNWDDM GHIWDHAFYS ELKVDPSECK ILLTDPPLNP VKNREQMIET MFEKYNFSGV FIQIQAVLSL YAQGLLTGLV IDSGDGVTHV VPVVDGYSYP
201: HLTKRMNVAG RHITSYLVDL LSRRGYAMNK SADFETVREI KEKLCYISYD YKREYQLGLE TTILVKSYTL PDGRVIKVGT ERFQAPEALF TPELIDVEGD
301: GLADMAFHCI QEMDIDNRMT LYQHIVLSGG STMYPGLPSR LEKEILDRCL DVVLKGNKDG LKKLRLRIED PPRRKHMVYL GGAVLAGIMK DAPEFWITKQ
401: EYQEEGVACL RKCGQA

Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)

001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA

Arabidopsis Description

ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.