Factsheet for TraesCS1B01G333100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G151300.1
TraesCS5B01G149800.2
TraesCS5D01G156400.2
TraesCS7A01G544700.1
TraesCS7B01G468100.1
TraesCS7D01G531100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	TraesCS7A01G544700.1	AT3G12810.1	17142478
AT3G33520.1	TraesCS7B01G468100.1	AT3G12810.1	17142478
AT3G33520.1	TraesCS7D01G531100.1	AT3G12810.1	17142478
AT3G33520.1	TraesCS7A01G544700.1	AT3G12810.1	17470967
AT3G33520.1	TraesCS7B01G468100.1	AT3G12810.1	17470967
AT3G33520.1	TraesCS7D01G531100.1	AT3G12810.1	17470967
AT3G33520.1	TraesCS5A01G151300.1	AT5G37055.1	17142478
AT3G33520.1	TraesCS5B01G149800.2	AT5G37055.1	17142478
AT3G33520.1	TraesCS5D01G156400.2	AT5G37055.1	17142478
AT3G33520.1	TraesCS5A01G151300.1	AT5G37055.1	17470967
AT3G33520.1	TraesCS5B01G149800.2	AT5G37055.1	17470967
AT3G33520.1	TraesCS5D01G156400.2	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G585700.1	Wheat	cytosol	99.3	99.3
TraesCS2B01G597500.1	Wheat	cytosol	98.84	98.84
TraesCS2D01G600800.1	Wheat	cytosol	98.6	98.6
HORVU0Hr1G005770.1	Barley	cytosol	97.44	97.44
OQU79631	Sorghum	cytosol	87.44	87.04
Zm00001d024059_P002	Maize	cytosol	86.28	86.28
Os01t0269900-01	Rice	cytosol	85.81	86.01
GSMUA_AchrUn_...	Banana	cytosol	73.02	72.18
VIT_11s0016g05490.t01	Wine grape	cytosol	67.91	67.44
Bra030818.1-P	Field mustard	cytosol	33.95	65.77
AT3G33520.1	Thale cress	cytosol	63.72	65.08
KRH61849	Soybean	cytosol, nucleus	65.58	64.68
CDY42404	Canola	cytosol	63.72	64.17
Solyc05g018600.2.1	Tomato	cytosol	63.26	62.1
PGSC0003DMT400038724	Potato	cytosol	63.02	61.87
TraesCS1B01G283900.1	Wheat	cytosol	28.84	32.98
TraesCS5B01G124100.1	Wheat	cytosol	28.84	32.89
TraesCS1B01G201400.1	Wheat	cytosol	28.84	32.89
TraesCS1B01G024500.1	Wheat	golgi, nucleus	28.6	32.63
TraesCS5B01G516100.1	Wheat	cytosol	28.37	32.36
TraesCS3B01G410000.1	Wheat	cytosol	27.21	28.96
TraesCS4B01G050600.1	Wheat	cytosol	25.81	28.32
TraesCS6B01G240500.1	Wheat	cytosol	25.81	26.0
TraesCS5B01G422700.1	Wheat	cytosol	20.47	24.31
TraesCS3B01G401300.2	Wheat	cytosol	23.26	24.04
TraesCS6B01G189000.1	Wheat	cytosol	24.19	23.48
TraesCS5B01G358500.1	Wheat	cytosol	23.95	23.25
TraesCS7B01G211500.1	Wheat	cytosol	23.02	22.71

Protein Annotations

EnsemblPlants:TraesCS1B01G333100.1	EnsemblPlantsGene:TraesCS1B01G333100	Gene3D:3.30.420.40	Gene3D:3.90.640.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006338	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:Actin	InterPro:Arp6	PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	PFAM:PF00022	SEG:seg
SMART:SM00268	SUPFAM:SSF53067	MapMan:12.4.4.4	:	:	:

Description

No Description!

Coordinates

chr1B:+:559574554..559579528

Molecular Weight (calculated)

48139.7 Da

IEP (calculated)

5.523

GRAVY (calculated)

-0.220

Length

430 amino acids

Sequence
(BLAST)

001: MTAGSRVVVI DNGGGLLKAG FGGDKDPIAV VPNCIAKSPG SNANSKKWLA ADQLQAQDVD VTGMTLRRPI DRGYLINTEV QREVWERVLR SLLQVDPTNS
101: SLLLVEPQFN PPGLQHATDE LVFEEFGFNS LCVADAPSLV HLYEASRQPS LFHTQCSLVM DCGFSFTHAS PVLQNFTLNY AVRRMDLGGK ALTNYLKELV
201: SYRSLNVMDE TLLIDDAKEK LCFVSLDVPR DLRLASLSFK DNPFRCSYIL PDGITYKKGF VKDLDEARRY CSLPVEGELD KKDGDSGIDK DRKKPELSQN
301: EFALTNERFL VPEMLFHPID LGMNQAGLAE CIVRAAQACH PYIQPVLYQS IILTGGSTLF PRFAERLQRE LRPLVPEEYQ VKIISQENPI LGVWRGGSVL
401: ASSPDFESMC VTKSEYEEMG SARCRRRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.