Factsheet for Os01t0269900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0689800-01
Os03t0367800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	Os02t0689800-01	AT3G12810.1	17142478
AT3G33520.1	Os02t0689800-01	AT3G12810.1	17470967
AT3G33520.1	Os03t0367800-01	AT5G37055.1	17142478
AT3G33520.1	Os03t0367800-01	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024059_P002	Maize	cytosol	86.71	86.51
OQU79631	Sorghum	cytosol	86.95	86.34
TraesCS2D01G600800.1	Wheat	cytosol	86.48	86.28
TraesCS2B01G597500.1	Wheat	cytosol	86.48	86.28
TraesCS2A01G585700.1	Wheat	cytosol	86.48	86.28
HORVU0Hr1G005770.1	Barley	cytosol	86.25	86.05
TraesCS1B01G333100.1	Wheat	cytosol	86.01	85.81
GSMUA_AchrUn_...	Banana	cytosol	72.73	71.72
VIT_11s0016g05490.t01	Wine grape	cytosol	68.07	67.44
KRH61849	Soybean	cytosol, nucleus	65.5	64.45
AT3G33520.1	Thale cress	cytosol	62.47	63.66
Bra030818.1-P	Field mustard	cytosol	32.87	63.51
Solyc05g018600.2.1	Tomato	cytosol	64.57	63.24
PGSC0003DMT400038724	Potato	cytosol	64.1	62.79
CDY42404	Canola	cytosol	62.24	62.53
Os05t0438800-01	Rice	plasma membrane, plastid	29.37	33.51
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	29.14	33.16
Os03t0836000-01	Rice	plasma membrane, plastid	28.9	32.89
Os05t0106600-01	Rice	nucleus	28.9	32.89
Os10t0510000-01	Rice	plastid	28.9	32.89
Os03t0718100-01	Rice	plasma membrane	28.67	32.63
Os01t0964133-01	Rice	plasma membrane	28.67	32.63
Os12t0163700-01	Rice	plastid	27.51	32.51
Os03t0783000-01	Rice	cytosol, nucleus	20.98	25.0
Os02t0596900-01	Rice	cytosol	24.01	24.07
Os01t0866100-01	Rice	plasma membrane	11.19	23.65
Os08t0137200-01	Rice	nucleus	23.54	22.8
Os08t0128300-01	Rice	cytosol	7.69	18.33

Protein Annotations

Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	EntrezGene:4326270	EMBL:AK068395	InterPro:Actin
InterPro:Arp6	ProteinID:BAD81174.1	ProteinID:BAF04614.1	ProteinID:BAS71497.1	ProteinID:EAZ11376.1	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006338	GO:GO:0006355	GO:GO:0006950	GO:GO:0006952	GO:GO:0006970	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628
GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:Os01g0269900	EnsemblPlants:Os01t0269900-01	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	UniProt:Q5NBI2
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000049E6B2	RefSeq:XP_015622329.1	RefSeq:XP_015622330.1	RefSeq:XP_015622331.1
RefSeq:XP_015622333.1	RefSeq:XP_015622334.1	SEG:seg	:	:	:

Description

ARP6Actin/actin-like family protein. (Os01t0269900-01)

Coordinates

chr1:-:9319015..9323339

Molecular Weight (calculated)

48163.9 Da

IEP (calculated)

5.707

GRAVY (calculated)

-0.241

Length

429 amino acids

Sequence
(BLAST)

001: MTGGSGVVVL DNGGGLLKAG FGGDMNPTAV VPNCMAKPPG SKKWLVADQL QAQDVDVTGM TLRRPIDRGY LINQEVQREV WERVIRNLLQ VDPNNSSLLL
101: VEPQFNPPAL QHATDELVFE ELGFKSLCVA DAPSLVHLYE ASRQPSLFRA QCSLVVDCGF SFTHASPVLQ NFTLNYAVRR MDLGGKALTN YLKELISYRS
201: LNVMDETLLI DDAKEKLCFV SLDVPGDLRL ARLSSNDNPF RCSYILPDGI TYKKGFVKDL DEACRYSSLP ANGESVRKDS SDSDRSKFED KKKPELSQNE
301: FVLTNERFLV PEMLFHPIDL GMNQAGLAEC IVRAIQACHP HLQPVLFERI ILTGGSTLFP RFTERLEKEL RPLVPDDYQV KIIAQEDPIL GAWRGGSLLA
401: HRPDFESMCI TKSEYEEMGS MRCRRRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.