Factsheet for PGSC0003DMT400038724

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400058037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	PGSC0003DMT400058037	AT5G37055.1	17142478
AT3G33520.1	PGSC0003DMT400058037	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g018600.2.1	Tomato	cytosol	97.95	97.95
VIT_11s0016g05490.t01	Wine grape	cytosol	77.4	78.29
KRH61849	Soybean	cytosol, nucleus	74.2	74.54
AT3G33520.1	Thale cress	cytosol	65.53	68.17
CDY42404	Canola	cytosol	65.98	67.68
Bra030818.1-P	Field mustard	cytosol	34.25	67.57
GSMUA_AchrUn_...	Banana	cytosol	66.21	66.67
OQU79631	Sorghum	cytosol	64.38	65.28
Zm00001d024059_P002	Maize	cytosol	63.7	64.88
Os01t0269900-01	Rice	cytosol	62.79	64.1
HORVU0Hr1G005770.1	Barley	cytosol	62.1	63.26
TraesCS2D01G600800.1	Wheat	cytosol	62.1	63.26
TraesCS2A01G585700.1	Wheat	cytosol	62.1	63.26
TraesCS2B01G597500.1	Wheat	cytosol	62.1	63.26
TraesCS1B01G333100.1	Wheat	cytosol	61.87	63.02
PGSC0003DMT400047481	Potato	cytosol	28.08	32.63
PGSC0003DMT400060225	Potato	cytosol	27.85	32.36
PGSC0003DMT400071331	Potato	cytosol	27.85	32.36
PGSC0003DMT400010174	Potato	cytosol	27.85	32.36
PGSC0003DMT400023026	Potato	cytosol	27.63	32.1
PGSC0003DMT400060953	Potato	cytosol	27.63	32.1
PGSC0003DMT400077954	Potato	cytosol	27.4	31.83
PGSC0003DMT400049429	Potato	cytosol	27.17	31.57
PGSC0003DMT400001169	Potato	cytosol	27.17	31.48
PGSC0003DMT400076499	Potato	cytosol	13.7	31.09
PGSC0003DMT400087294	Potato	mitochondrion	19.41	31.02
PGSC0003DMT400076501	Potato	cytosol	13.93	30.5
PGSC0003DMT400074882	Potato	cytosol	23.74	28.11
PGSC0003DMT400088088	Potato	cytosol	12.33	27.84
PGSC0003DMT400052197	Potato	cytosol	24.66	27.07
PGSC0003DMT400022205	Potato	cytosol	22.37	26.78
PGSC0003DMT400022210	Potato	cytosol	22.37	26.63
PGSC0003DMT400019210	Potato	cytosol	21.69	26.39
PGSC0003DMT400074887	Potato	cytosol	21.46	25.41
PGSC0003DMT400056033	Potato	cytosol	23.74	23.91
PGSC0003DMT400027956	Potato	cytosol	23.06	23.43

Protein Annotations

EntrezGene:102596585	MapMan:35.1	InterPro:Actin	InterPro:Arp6	ncoils:Coil	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338
GO:GO:0006355	GO:GO:0006950	GO:GO:0006970	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008283	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628	GO:GO:0009791	GO:GO:0009845
GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0016043	UniProt:M1B7A6	PFAM:PF00022
EnsemblPlantsGene:PGSC0003DMG400014966	PGSC:PGSC0003DMG400014966	EnsemblPlants:PGSC0003DMT400038724	PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	SMART:SM00268
SUPFAM:SSF53067	UniParc:UPI0002949D79	RefSeq:XP_006338169.1	:	:	:

Description

Actin arp6 [Source:PGSC_GENE;Acc:PGSC0003DMG400014966]

Coordinates

chr5:-:19620859..19623847

Molecular Weight (calculated)

49454.2 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.270

Length

438 amino acids

Sequence
(BLAST)

001: MSNVVVLDNG AGVIKAGIGG ERDPTAIVPN SMGRPLSSKK WLMADQLLSP DVDLTSATAR RPFDRGYLIN PDLQSSIWSH IFSNLLKITP SHSSLLLTEP
101: LFNLPSIQRS IDEIVFEDFN FKALYVSDSP SLVHLYEASR RPYGLVSKAQ CSLVVDCGFS FTHASPVFQN FTLNYAVKRL DLGGKALSNY LKELVSYRSV
201: NLMDESFLMD HVKEELCFVS LDLPRDLQIA RKPGKDNLFR CTYVLPDGVT HTKGFLKDPE EPKRYLPLYD EALQQVEEEQ IDMDQLENTD NSEDRNRRNG
301: SKIDLTKNEF GLTNERFLVP EMMFRPADLG LNQAGLAECI HRAISSCHSH LHPVLYESII LTGGSTLFPH FAKRLEMDLR PLVPDKYRLK ITTQEDPILG
401: VWRGGSLLAS SPDFDAMCIT KAEYEELGSA RCRKRFFH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.