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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400074882 Potato cytosol 92.35 91.35
PGSC0003DMT400074887 Potato cytosol 86.34 85.41
PGSC0003DMT400022210 Potato cytosol 81.15 80.71
Zm00001d019635_P001 Maize cytosol 29.51 78.26
Zm00001d016605_P001 Maize cytosol 32.24 74.68
PGSC0003DMT400076499 Potato cytosol 38.8 73.58
Zm00001d016508_P001 Maize cytosol 26.23 69.57
TraesCS5D01G132200.1 Wheat golgi 69.67 68.73
TraesCS1B01G024500.1 Wheat golgi, nucleus 69.67 67.64
TraesCS1D01G020000.1 Wheat cytosol 69.67 67.64
GSMUA_Achr6P25350_001 Banana cytosol 69.4 67.37
PGSC0003DMT400010174 Potato cytosol 69.4 67.37
Os11t0163100-01 Rice nucleus, plasma membrane, plastid 69.4 67.37
Os05t0106600-01 Rice nucleus 69.4 67.37
KXG23031 Sorghum cytosol 69.4 67.37
TraesCS5B01G124100.1 Wheat cytosol 69.4 67.37
GSMUA_Achr9P03170_001 Banana cytosol 69.13 67.29
PGSC0003DMT400047481 Potato cytosol 69.13 67.11
TraesCS5D01G516200.1 Wheat cytosol 69.13 67.11
TraesCS5B01G516100.1 Wheat cytosol 69.13 67.11
Zm00001d011086_P005 Maize cytosol 69.13 67.11
EER90564 Sorghum cytosol 69.13 67.11
KXG21029 Sorghum cytosol 69.13 67.11
HORVU5Hr1G117900.1 Barley cytosol 69.13 67.11
EES08028 Sorghum cytosol 69.13 67.11
Zm00001d053177_P004 Maize cytosol 69.13 67.11
GSMUA_Achr2P16160_001 Banana cytosol 69.13 67.11
Zm00001d035720_P002 Maize cytosol 69.13 67.11
GSMUA_Achr9P08850_001 Banana cytosol 63.93 67.05
GSMUA_Achr5P29190_001 Banana cytosol 63.66 66.95
GSMUA_Achr8P16150_001 Banana cytosol 68.85 66.84
Os01t0964133-01 Rice plasma membrane 68.85 66.84
GSMUA_Achr3P02960_001 Banana cytosol 68.85 66.84
Os03t0836000-01 Rice plasma membrane, plastid 68.85 66.84
TraesCS4A01G356100.2 Wheat cytosol 69.13 66.75
GSMUA_Achr7P10410_001 Banana cytosol 68.58 66.58
PGSC0003DMT400060953 Potato cytosol 68.58 66.58
PGSC0003DMT400049429 Potato cytosol 68.58 66.58
GSMUA_Achr8P02660_001 Banana cytosol 68.31 66.31
GSMUA_Achr10P... Banana cytosol 68.31 66.31
PGSC0003DMT400060225 Potato cytosol 68.31 66.31
GSMUA_Achr11P... Banana cytosol 68.03 66.05
PGSC0003DMT400071331 Potato cytosol 68.03 66.05
GSMUA_Achr11P... Banana cytosol 62.84 65.9
PGSC0003DMT400023026 Potato cytosol 67.76 65.78
Zm00001d035722_P007 Maize plasma membrane 69.13 65.71
PGSC0003DMT400077954 Potato cytosol 67.49 65.52
Zm00001d019396_P001 Maize cytosol 30.05 65.48
Os05t0438800-01 Rice plasma membrane, plastid 67.21 65.43
PGSC0003DMT400001169 Potato cytosol 67.49 65.34
EES19603 Sorghum cytosol 66.94 65.16
Zm00001d012277_P001 Maize cytosol 66.94 65.16
TraesCS1D01G274400.1 Wheat cytosol 66.67 64.89
TraesCS1B01G283900.1 Wheat cytosol 66.67 64.89
EES01810 Sorghum cytosol 66.67 64.89
TraesCS1A01G274400.1 Wheat golgi 66.67 64.89
HORVU1Hr1G074350.1 Barley cytosol 66.67 64.89
Zm00001d010159_P002 Maize extracellular, plasma membrane 66.39 64.63
PGSC0003DMT400087294 Potato mitochondrion 48.36 64.6
Zm00001d042731_P002 Maize extracellular, plasma membrane, plastid 66.12 64.36
Zm00001d034761_P002 Maize cytosol 68.85 64.29
TraesCS1A01G020500.2 Wheat cytosol 69.67 62.65
HORVU1Hr1G002840.6 Barley plasma membrane 69.67 62.65
TraesCS5A01G124300.2 Wheat golgi 69.4 62.1
KXG21030 Sorghum cytosol 64.21 60.41
GSMUA_Achr10P... Banana cytosol 45.36 60.36
GSMUA_Achr6P34320_001 Banana cytosol 40.16 60.25
PGSC0003DMT400088088 Potato cytosol 31.42 59.28
GSMUA_Achr2P08030_001 Banana cytosol 56.01 58.57
Zm00001d003298_P001 Maize cytosol 41.8 58.17
Os01t0866100-01 Rice plasma membrane 32.24 58.13
Zm00001d004087_P001 Maize cytosol 34.15 57.87
Zm00001d011087_P001 Maize plastid 69.13 55.73
Zm00001d007792_P001 Maize cytosol 39.62 54.92
Zm00001d008746_P001 Maize cytosol 39.89 53.09
PGSC0003DMT400076501 Potato cytosol 28.69 52.5
HORVU5Hr1G039850.3 Barley mitochondrion 66.12 52.04
Zm00001d004855_P002 Maize cytoskeleton, cytosol, nucleus 68.85 42.71
PGSC0003DMT400052197 Potato cytosol 37.98 34.84
PGSC0003DMT400056033 Potato cytosol 37.98 31.95
PGSC0003DMT400027956 Potato cytosol 35.79 30.39
PGSC0003DMT400019210 Potato cytosol 29.23 29.72
Zm00001d034421_P004 Maize plastid 36.34 28.42
PGSC0003DMT400038724 Potato cytosol 26.78 22.37
Protein Annotations
EnsemblPlants:PGSC0003DMT400022205EnsemblPlantsGene:PGSC0003DMG400008618Gene3D:3.30.420.40Gene3D:3.90.640.10InterPro:ActinPANTHER:PTHR11937
PANTHER:PTHR11937:SF361PFAM:PF00022PGSC:PGSC0003DMG400008618PRINTS:PR00190SMART:SM00268SUPFAM:SSF53067
UniParc:UPI0002956CCDUniProt:M1AGD9MapMan:20.2.1:::
Description
Beta-actin [Source:PGSC_GENE;Acc:PGSC0003DMG400008618]
Coordinates
chr4:-:59639400..59640664
Molecular Weight (calculated)
40915.5 Da
IEP (calculated)
6.653
GRAVY (calculated)
-0.138
Length
366 amino acids
Sequence
(BLAST)
001: MADGIDIQTL VIDNGTARSK AGFAGDDAPK TVFKSMVGHP RHTGVMLRMG QKDAYVGDEA QRNRGILTLQ YPIEHGMVKN WDHMEKIWHH IFYNELRVAP
101: EEHPVLLTEV PLIPKVNREK MTEIMFEKFN VPSMYVAIQD VLSLFANGRL TGIVLNSGDG STHTVPIYEG HALPHAISWL GIGGHDLTDY LWELIREGFA
201: CNVAIEENIC WRMKETITYV ALDFKQEIEK AKNRSSVDKG FELPDGQIFY IGAGSFQCPE VLFQPSLVGK GSTGIHEKVY NSIMKSDVDI RKDLFANIVL
301: SGGSTMFPGL AERMSKEIIA LAPRGTKIEV IAPPERKYNT WIGGSILASL NTFKRVSFSL LYLTNQ
Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.