Factsheet for PGSC0003DMT400077954

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076090.2.1	Tomato	unclear	99.2	99.2
PGSC0003DMT400060953	Potato	cytosol	98.41	98.41
PGSC0003DMT400071331	Potato	cytosol	98.14	98.14
PGSC0003DMT400060225	Potato	cytosol	98.14	98.14
VIT_13s0019g01240.t01	Wine grape	cytosol	97.35	97.35
PGSC0003DMT400001169	Potato	cytosol	97.35	97.09
KRH01660	Soybean	mitochondrion, nucleus	97.08	97.08
KRH70465	Soybean	mitochondrion, nucleus	97.08	97.08
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	96.55	96.55
KRG93168	Soybean	mitochondrion, nucleus	96.29	96.29
PGSC0003DMT400047481	Potato	cytosol	95.49	95.49
PGSC0003DMT400010174	Potato	cytosol	95.23	95.23
PGSC0003DMT400076499	Potato	cytosol	48.54	94.82
PGSC0003DMT400049429	Potato	cytosol	94.43	94.43
PGSC0003DMT400023026	Potato	cytosol	93.9	93.9
PGSC0003DMT400076501	Potato	cytosol	45.62	86.0
PGSC0003DMT400087294	Potato	mitochondrion	56.23	77.37
PGSC0003DMT400022210	Potato	cytosol	67.11	68.75
PGSC0003DMT400022205	Potato	cytosol	65.52	67.49
PGSC0003DMT400074882	Potato	cytosol	66.05	67.3
PGSC0003DMT400074887	Potato	cytosol	62.86	64.05
PGSC0003DMT400088088	Potato	cytosol	32.63	63.4
PGSC0003DMT400052197	Potato	cytosol	43.24	40.85
PGSC0003DMT400019210	Potato	cytosol	38.46	40.28
PGSC0003DMT400056033	Potato	cytosol	44.03	38.16
PGSC0003DMT400027956	Potato	cytosol	39.79	34.8
PGSC0003DMT400038724	Potato	cytosol	31.83	27.4

Protein Annotations

EntrezGene:102593904	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:AAB40096	ProteinID:AAB40096.1
InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
UniProt:M1CZ41	PFAM:PF00022	EnsemblPlantsGene:PGSC0003DMG400030319	PGSC:PGSC0003DMG400030319	EnsemblPlants:PGSC0003DMT400077954	PRINTS:PR00190
ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	SMART:SM00268
SUPFAM:SSF53067	EMBL:U60483	UniParc:UPI000295CDC6	RefSeq:XP_006350765.1	:	:

Description

Actin [Source:PGSC_GENE;Acc:PGSC0003DMG400030319]

Coordinates

chr6:+:56589763..56592303

Molecular Weight (calculated)

41760.1 Da

IEP (calculated)

5.286

GRAVY (calculated)

-0.204

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVMDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDVKEKLSY IALDYEQELD TSKTSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFNG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT3G46520.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYEQELE TSKTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT12Actin-12 [Source:UniProtKB/Swiss-Prot;Acc:P53497]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.