CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 25806999

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93168
KRG95386
KRH01660
KRH04597
KRH10268
KRH23061
KRH24799
KRH28456
KRH29804
KRH38098
KRH56507
KRH57934
KRH63322
KRH67068
KRH70465
KRH71847
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	KRH04597	AT2G23420.1	21798944
AT2G37620.1	KRH28456	AT2G23420.1	21798944
AT2G37620.1	KRH57934	AT2G23420.1	21798944
AT2G37620.1	KRH63322	AT2G23420.1	21798944
AT2G37620.1	KRH77015	AT2G23420.1	21798944
AT2G37620.1	KRG93168	AT2G37620.1	21798944
AT2G37620.1	KRG95386	AT2G37620.1	21798944
AT2G37620.1	KRH01660	AT2G37620.1	21798944
AT2G37620.1	KRH10268	AT2G37620.1	21798944
AT2G37620.1	KRH23061	AT2G37620.1	21798944
AT2G37620.1	KRH24799	AT2G37620.1	21798944
AT2G37620.1	KRH29804	AT2G37620.1	21798944
AT2G37620.1	KRH38098	AT2G37620.1	21798944
AT2G37620.1	KRH56507	AT2G37620.1	21798944
AT2G37620.1	KRH67068	AT2G37620.1	21798944
AT2G37620.1	KRH70465	AT2G37620.1	21798944
AT2G37620.1	KRH71847	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70465	Soybean	mitochondrion, nucleus	99.73	99.73
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	97.88	97.88
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	97.88	97.88
PGSC0003DMT400071331	Potato	cytosol	97.61	97.61
KRG93168	Soybean	mitochondrion, nucleus	97.61	97.61
AT3G12110.1	Thale cress	cytosol	97.35	97.35
VIT_13s0019g01240.t01	Wine grape	cytosol	97.35	97.35
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	97.35	97.35
KRG95386	Soybean	cytosol	97.08	97.08
KRH10268	Soybean	mitochondrion, nucleus	97.08	97.08
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	97.08	97.08
PGSC0003DMT400077954	Potato	cytosol	97.08	97.08
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	97.08	97.08
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	96.82	96.82
KRH38098	Soybean	cytosol	96.82	96.82
PGSC0003DMT400060225	Potato	cytosol	96.82	96.82
Solyc06g076090.2.1	Tomato	unclear	96.82	96.82
GSMUA_Achr10P...	Banana	cytosol	67.37	96.58
KRH71847	Soybean	endoplasmic reticulum, nucleus	96.55	96.55
CDY01102	Canola	cytosol	96.55	96.55
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.55	96.55
Bra034778.1-P	Field mustard	cytosol	96.55	96.55
KRH43389	Soybean	cytosol	96.29	96.29
Bra018210.1-P	Field mustard	cytosol	96.29	96.29
AT3G46520.2	Thale cress	cytosol	96.29	96.29
KRH59535	Soybean	cytosol	96.29	96.29
CDX71119	Canola	cytosol	96.29	96.29
CDX86081	Canola	cytosol	96.29	96.29
CDX88698	Canola	cytosol	96.29	96.29
GSMUA_AchrUn_...	Banana	plasma membrane	96.29	96.29
Bra019486.1-P	Field mustard	cytosol	96.29	96.29
CDY38066	Canola	cytosol	96.29	96.29
CDX99111	Canola	cytosol	96.29	96.29
CDY21777	Canola	cytosol	96.29	96.29
CDY08455	Canola	cytosol	96.29	96.29
Bra006719.1-P	Field mustard	cytosol	84.62	96.08
AT2G37620.1	Thale cress	cytosol	96.02	96.02
Bra007025.1-P	Field mustard	cytosol	96.02	96.02
Bra014865.1-P	Field mustard	cytosol	96.02	96.02
AT3G53750.2	Thale cress	cytosol	96.02	96.02
AT5G59370.2	Thale cress	cytosol	96.02	96.02
Bra033819.1-P	Field mustard	cytosol	96.02	96.02
KRH64098	Soybean	cytosol	96.02	96.02
CDX82985	Canola	cytosol	96.02	96.02
CDX76191	Canola	cytosol	96.02	96.02
CDX78202	Canola	cytosol	96.02	96.02
CDY53444	Canola	cytosol	95.76	95.76
CDX73527	Canola	cytosol	89.66	95.75
CDY48688	Canola	cytosol	86.21	95.59
Bra020319.1-P	Field mustard	cytosol	86.21	95.59
PGSC0003DMT400001169	Potato	cytosol	95.76	95.5
CDY30846	Canola	cytosol	95.49	95.49
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	84.08	95.48
CDX91373	Canola	cytosol	95.23	95.23
Bra000010.1-P	Field mustard	cytosol	95.23	95.23
Bra017166.1-P	Field mustard	cytosol	95.23	95.23
CDX74944	Canola	cytosol	95.23	95.23
CDX93360	Canola	cytosol	83.29	94.86
CDY65255	Canola	cytosol	83.29	94.86
CDY07779	Canola	cytosol	88.33	94.6
Bra005178.1-P	Field mustard	cytosol	88.59	94.35
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.9	93.9
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	93.63	93.63
GSMUA_Achr7P18630_001	Banana	cytosol	78.51	92.5
CDX94448	Canola	cytosol	92.31	89.92
CDX79746	Canola	cytosol	88.33	89.52
Bra003156.1-P	Field mustard	cytosol	48.28	88.35
KRH24799	Soybean	cytosol	93.1	85.61
CDY71336	Canola	cytosol	54.91	75.27
CDX67573	Canola	cytosol	55.44	68.75
Bra002571.1-P	Field mustard	nucleus	96.02	59.83
CDY33033	Canola	nucleus	78.51	54.71
CDX80274	Canola	nucleus	77.19	53.01
KRG94584	Soybean	cytosol	44.03	42.67
KRH06905	Soybean	cytosol	43.5	42.16
KRH39934	Soybean	cytosol	33.95	38.79
KRH13968	Soybean	cytosol, nucleus	37.14	38.78
KRH32953	Soybean	cytosol	36.87	38.5
KRH23861	Soybean	cytosol, nucleus	36.87	38.5
KRH66446	Soybean	nucleus	42.71	36.18
KRH48882	Soybean	nucleus	42.18	35.65
KRH41617	Soybean	nucleus	40.58	35.5
KRH59222	Soybean	cytosol	18.04	35.42
KRH59228	Soybean	nucleus	37.93	33.41
KRH61849	Soybean	cytosol, nucleus	33.69	29.13

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EMBL:ACUP02011524	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	EnsemblPlantsGene:GLYMA_18G290800	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	UniProt:I1N570
EnsemblPlants:KRH01660	ProteinID:KRH01660	ProteinID:KRH01660.1	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF364	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI000233F296	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:56972637..56976362

Molecular Weight (calculated)

41807.1 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.189

Length

377 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDF LMKILTERGY
201: SFTTSAEREI VRDVKEKLSY IALDYEQELE TARTSSSVEK SYELPDGQVI TIGDERFRCP EVLFQPSMIG MEASGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIS ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.