Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000010.1-P | Field mustard | cytosol | 94.57 | 97.08 |
| CDY07779 | Canola | cytosol | 88.11 | 96.88 |
| CDY65255 | Canola | cytosol | 82.69 | 96.68 |
| CDX91373 | Canola | cytosol | 93.8 | 96.29 |
| CDX74944 | Canola | cytosol | 93.8 | 96.29 |
| CDX93360 | Canola | cytosol | 82.17 | 96.07 |
| AT2G37620.1 | Thale cress | cytosol | 93.28 | 95.76 |
| CDX78202 | Canola | cytosol | 93.28 | 95.76 |
| CDX73527 | Canola | cytosol | 87.34 | 95.75 |
| CDX76191 | Canola | cytosol | 93.02 | 95.49 |
| CDY30846 | Canola | cytosol | 92.51 | 94.96 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 91.99 | 94.43 |
| GSMUA_Achr10P... | Banana | cytosol | 63.82 | 93.92 |
| KRH38098 | Soybean | cytosol | 91.47 | 93.9 |
| CDX82985 | Canola | cytosol | 91.47 | 93.9 |
| CDX99111 | Canola | cytosol | 91.21 | 93.63 |
| CDY21777 | Canola | cytosol | 91.21 | 93.63 |
| KRH10268 | Soybean | mitochondrion, nucleus | 91.21 | 93.63 |
| CDX86081 | Canola | cytosol | 91.21 | 93.63 |
| CDX88698 | Canola | cytosol | 91.21 | 93.63 |
| CDX71119 | Canola | cytosol | 91.21 | 93.63 |
| CDY53444 | Canola | cytosol | 91.21 | 93.63 |
| KRH71847 | Soybean | endoplasmic reticulum, nucleus | 91.21 | 93.63 |
| CDY38066 | Canola | cytosol | 91.21 | 93.63 |
| KRG93168 | Soybean | mitochondrion, nucleus | 90.96 | 93.37 |
| KRH56507 | Soybean | endoplasmic reticulum, mitochondrion | 90.96 | 93.37 |
| VIT_06s0004g04570.t01 | Wine grape | cytosol | 90.7 | 93.35 |
| KRH23061 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 90.7 | 93.1 |
| KRH29804 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 90.7 | 93.1 |
| VIT_13s0019g01240.t01 | Wine grape | cytosol | 90.7 | 93.1 |
| CDY48688 | Canola | cytosol | 81.65 | 92.94 |
| KRH67068 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 90.44 | 92.84 |
| KRG95386 | Soybean | cytosol | 90.44 | 92.84 |
| VIT_08s0007g06520.t01 | Wine grape | cytosol | 90.18 | 92.57 |
| CDX69885 | Canola | cytosol | 89.92 | 92.31 |
| KRH70465 | Soybean | mitochondrion, nucleus | 89.92 | 92.31 |
| KRH01660 | Soybean | mitochondrion, nucleus | 89.92 | 92.31 |
| CDY21607 | Canola | cytosol | 89.92 | 92.31 |
| CDX85794 | Canola | cytosol | 83.98 | 92.07 |
| CDY40061 | Canola | cytosol | 83.98 | 92.07 |
| CDY31972 | Canola | cytosol | 83.98 | 92.07 |
| CDY30296 | Canola | cytosol | 83.98 | 92.07 |
| CDY01102 | Canola | cytosol | 89.41 | 91.78 |
| CDX81140 | Canola | cytosol | 89.41 | 91.78 |
| CDY56544 | Canola | cytosol | 89.41 | 91.78 |
| CDX79746 | Canola | cytosol | 88.11 | 91.67 |
| CDY08455 | Canola | cytosol | 89.15 | 91.51 |
| PGSC0003DMT400023026 | Potato | cytosol | 89.15 | 91.51 |
| Solyc10g086460.1.1 | Tomato | unclear | 88.11 | 90.45 |
| PGSC0003DMT400049429 | Potato | cytosol | 88.11 | 90.45 |
| GSMUA_Achr7P18630_001 | Banana | cytosol | 74.42 | 90.0 |
| CDX87810 | Canola | cytosol | 87.08 | 89.39 |
| CDX99315 | Canola | cytosol | 73.64 | 88.24 |
| CDX95498 | Canola | cytosol | 85.27 | 87.53 |
| CDY18545 | Canola | cytosol | 85.27 | 87.53 |
| CDX92272 | Canola | cytosol | 85.27 | 87.53 |
| CDY61982 | Canola | cytosol | 85.27 | 87.53 |
| CDX82326 | Canola | cytosol | 85.01 | 87.27 |
| CDX92271 | Canola | cytosol | 70.54 | 86.12 |
| Solyc09g010750.1.1 | Tomato | cytosol | 38.5 | 83.24 |
| KRH24799 | Soybean | cytosol | 86.56 | 81.71 |
| CDY71336 | Canola | cytosol | 54.78 | 77.09 |
| CDX67573 | Canola | cytosol | 54.52 | 69.41 |
| CDY14813 | Canola | cytosol | 61.76 | 68.09 |
| CDY06885 | Canola | cytosol | 57.88 | 67.67 |
| CDY33033 | Canola | nucleus | 74.42 | 53.23 |
| CDX80274 | Canola | nucleus | 73.39 | 51.73 |
| CDY20066 | Canola | cytosol | 40.83 | 40.62 |
| CDY00172 | Canola | cytosol | 40.83 | 40.62 |
| CDY52404 | Canola | cytosol | 41.09 | 40.25 |
| CDY13674 | Canola | cytosol | 41.09 | 40.25 |
| CDY62715 | Canola | cytosol | 35.92 | 38.29 |
| CDY56730 | Canola | cytosol | 35.4 | 38.06 |
| CDX67843 | Canola | cytosol | 35.4 | 38.06 |
| CDX71774 | Canola | cytosol | 34.11 | 36.97 |
| CDX83847 | Canola | cytosol | 40.05 | 35.31 |
| CDY19213 | Canola | cytosol | 40.31 | 35.29 |
| CDY26159 | Canola | cytosol | 40.31 | 35.29 |
| CDX96721 | Canola | cytosol | 39.79 | 35.16 |
| CDY52344 | Canola | cytosol | 35.4 | 33.99 |
| CDY21087 | Canola | cytosol | 35.92 | 32.55 |
| CDY34585 | Canola | cytosol | 35.66 | 32.32 |
| CDX98005 | Canola | cytosol | 35.66 | 32.32 |
| CDY19392 | Canola | cytosol | 35.4 | 32.08 |
| CDY42404 | Canola | cytosol | 28.94 | 26.23 |
Protein Annotations
| EnsemblPlants:CDX94448 | EnsemblPlantsGene:GSBRNA2T00157603001 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Actin | InterPro:Actin_CS |
| PANTHER:PTHR11937 | PANTHER:PTHR11937:SF276 | PFAM:PF00022 | PRINTS:PR00190 | ProteinID:CDX94448 | ProteinID:CDX94448.1 |
| ScanProsite:PS00432 | SMART:SM00268 | SUPFAM:SSF53067 | UniParc:UPI0004EEB223 | MapMan:20.2.1 | : |
Description
BnaC01g17360D
Coordinates
chrLK031881:+:1280741..1282509
Molecular Weight (calculated)
43164.0 Da
IEP (calculated)
4.898
GRAVY (calculated)
-0.154
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGEDIQPL VRDNGTEMAG FAGDDAPRAV FPSIVDRPRH TGVMVGMGQK DAYVGDEAQS KCGILTLKYP IEHGIVNNWD DMEKIWHHTF YNELRVAPEE
101: HPILLSEAPL NPKANREKMT QIMFETFNAP AMYVAIQAVL SLYASGRTTG DFCLIMVCVL AGIVLDSGDG VSHTVPIYEG YALPHAILRL DLVGRDLKDA
201: FMKILTERGY SFTTTAEREI VRDIKEKLCY IALDYEQELE TSKTSSSVEK NYEMPDGQVI TIGAERFRCP EVLYQPSMIG MENPCIHETT YNSIMKCDVD
301: IRKDLYSNIV LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: HPILLSEAPL NPKANREKMT QIMFETFNAP AMYVAIQAVL SLYASGRTTG DFCLIMVCVL AGIVLDSGDG VSHTVPIYEG YALPHAILRL DLVGRDLKDA
201: FMKILTERGY SFTTTAEREI VRDIKEKLCY IALDYEQELE TSKTSSSVEK NYEMPDGQVI TIGAERFRCP EVLYQPSMIG MENPCIHETT YNSIMKCDVD
301: IRKDLYSNIV LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.