CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06885	Canola	cytosol	83.48	88.52
CDY40061	Canola	cytosol	71.79	71.39
CDX85794	Canola	cytosol	71.79	71.39
CDY30296	Canola	cytosol	71.51	71.1
CDY31972	Canola	cytosol	71.51	71.1
CDX73527	Canola	cytosol	71.23	70.82
CDX93360	Canola	cytosol	65.24	69.18
CDY65255	Canola	cytosol	64.96	68.88
CDX92271	Canola	cytosol	62.11	68.77
CDY01102	Canola	cytosol	72.65	67.64
CDY08455	Canola	cytosol	72.36	67.37
CDX87810	Canola	cytosol	72.08	67.11
CDY21607	Canola	cytosol	71.51	66.58
CDX69885	Canola	cytosol	71.51	66.58
AT2G42100.1	Thale cress	cytosol	71.51	66.4
CDY53444	Canola	cytosol	71.23	66.31
CDX76191	Canola	cytosol	71.23	66.31
CDX78202	Canola	cytosol	71.23	66.31
CDY48688	Canola	cytosol	64.1	66.18
CDX82985	Canola	cytosol	70.94	66.05
CDY30846	Canola	cytosol	70.94	66.05
CDX71119	Canola	cytosol	70.94	66.05
CDX99111	Canola	cytosol	70.94	66.05
CDX81140	Canola	cytosol	70.94	66.05
CDX88698	Canola	cytosol	70.94	66.05
CDY56544	Canola	cytosol	70.94	66.05
CDX86081	Canola	cytosol	70.94	66.05
CDX92272	Canola	cytosol	70.66	65.78
CDY21777	Canola	cytosol	70.66	65.78
CDX82326	Canola	cytosol	70.66	65.78
CDY18545	Canola	cytosol	70.66	65.78
CDY61982	Canola	cytosol	70.66	65.78
CDX74944	Canola	cytosol	70.66	65.78
CDY38066	Canola	cytosol	70.66	65.78
CDX95498	Canola	cytosol	70.66	65.78
CDX91373	Canola	cytosol	70.66	65.78
CDX99315	Canola	cytosol	60.11	65.33
AT2G42170.3	Thale cress	cytosol	60.11	64.13
CDY07779	Canola	cytosol	63.82	63.64
CDX94448	Canola	cytosol	68.09	61.76
CDX79746	Canola	cytosol	63.82	60.22
AT2G42090.1	Thale cress	cytosol	60.4	57.92
CDY71336	Canola	cytosol	44.44	56.73
CDX67573	Canola	cytosol	42.17	48.68
CDY33033	Canola	nucleus	57.55	37.34
CDX80274	Canola	nucleus	56.41	36.07
CDY20066	Canola	cytosol	39.32	35.48
CDY00172	Canola	cytosol	39.32	35.48
CDY13674	Canola	cytosol	39.32	34.94
CDY52404	Canola	cytosol	39.32	34.94
CDY56730	Canola	cytosol	33.05	32.22
CDY62715	Canola	cytosol	33.05	31.96
CDX67843	Canola	cytosol	32.76	31.94
CDX71774	Canola	cytosol	32.19	31.65
CDX83847	Canola	cytosol	37.61	30.07
CDX96721	Canola	cytosol	37.04	29.68
CDY19213	Canola	cytosol	37.32	29.64
CDY26159	Canola	cytosol	37.32	29.64
CDY52344	Canola	cytosol	33.33	29.03
CDY21087	Canola	cytosol	33.05	27.17
CDY34585	Canola	cytosol	32.76	26.93
CDX98005	Canola	cytosol	32.76	26.93
CDY19392	Canola	cytosol	32.48	26.7
CDY42404	Canola	cytosol	31.05	25.53

Protein Annotations

EnsemblPlants:CDY14813	EnsemblPlantsGene:GSBRNA2T00084685001	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin_CS
PANTHER:PTHR11937	PANTHER:PTHR11937:SF364	PFAM:PF00022	PRINTS:PR00190	ProteinID:CDY14813	ProteinID:CDY14813.1
ScanProsite:PS00432	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0004EE8A8E	UniProt:A0A078FR62	MapMan:20.2.1

Description

BnaC04g48100DBnaC04g48100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR62]

Coordinates

chrLK032047:+:517529..521943

Molecular Weight (calculated)

39515.3 Da

IEP (calculated)

5.276

GRAVY (calculated)

-0.321

Length

351 amino acids

Sequence
(BLAST)

001: MNIALLQGIK NYWRPAATRT SFGADDTDMV PIVCDNGTGM VKAGLARDDA PRAVFPSIAG RPRHMEHINN WDDMEKIWHH TFYNELRVAP EKHPVLLGEA
101: PLTPKANREK ITQIMFETFD VPKLYVANEA VLSLYASGRT TGIVVDSGDG VSHTVPIFEG YPLPQAISRL DLAGHDITDY LTKIMMERGY TYTTTAEREV
201: IRDIKEKLGY IAHDLDQEMK RATASSAIDR TYELPDGQVI TIGAERFRCP EALFQPSLVD METCGIHETT YNSIMKCDVD IRKDLFGNIV LSGGTTMFPG
301: LADRMSKEMA AEEQCLDWRR VLASLDNFQQ MWVTKAEYNE NGPGIIHRKC F

Best Arabidopsis Sequence Match ( AT1G49240.1 )
(BLAST)

001: MADADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFSG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYDEAGPG IVHRKCF

Arabidopsis Description

ACT8Actin-8 [Source:UniProtKB/Swiss-Prot;Acc:Q96293]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.