Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G42100.1 | Thale cress | cytosol | 82.98 | 72.22 |
| AT3G12110.1 | Thale cress | cytosol | 79.33 | 69.23 |
| AT5G09810.1 | Thale cress | cytosol | 78.72 | 68.7 |
| AT1G49240.1 | Thale cress | cytosol | 78.12 | 68.17 |
| AT3G18780.3 | Thale cress | cytosol | 78.12 | 68.17 |
| AT2G37620.1 | Thale cress | cytosol | 77.81 | 67.9 |
| AT3G46520.2 | Thale cress | cytosol | 77.81 | 67.9 |
| AT3G53750.2 | Thale cress | cytosol | 77.81 | 67.9 |
| AT5G59370.2 | Thale cress | cytosol | 77.51 | 67.64 |
| Bra016895.1-P | Field mustard | cytosol | 59.27 | 64.36 |
| AT2G42090.1 | Thale cress | cytosol | 69.91 | 62.84 |
| CDY14813 | Canola | cytosol | 64.13 | 60.11 |
| CDY06885 | Canola | cytosol | 59.27 | 58.91 |
| AT3G27000.1 | Thale cress | cytosol | 41.03 | 34.7 |
| AT3G60830.1 | Thale cress | cytosol | 35.87 | 32.51 |
| AT1G18450.1 | Thale cress | cytosol | 38.91 | 29.02 |
| AT1G13180.1 | Thale cress | cytosol | 36.17 | 27.87 |
| AT3G33520.1 | Thale cress | cytosol | 33.43 | 26.13 |
Protein Annotations
| MapMan:20.2.1 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | EntrezGene:818817 | ProteinID:AEC10082.1 | EMBL:AK118975 |
| ProteinID:ANM61511.1 | ArrayExpress:AT2G42170 | EnsemblPlantsGene:AT2G42170 | RefSeq:AT2G42170 | TAIR:AT2G42170 | RefSeq:AT2G42170-TAIR-G |
| EnsemblPlants:AT2G42170.3 | InterPro:Actin | InterPro:Actin_CS | Unigene:At.44270 | GO:GO:0008150 | RefSeq:NP_001323727.1 |
| RefSeq:NP_850363.1 | PFAM:PF00022 | PRINTS:PR00190 | ScanProsite:PS00432 | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF266 |
| UniProt:Q8GWA5 | SMART:SM00268 | SUPFAM:SSF53067 | UniParc:UPI00000ADFE8 | : | : |
Description
Actin family protein [Source:UniProtKB/TrEMBL;Acc:Q8GWA5]
Coordinates
chr2:+:17577714..17580397
Molecular Weight (calculated)
37084.5 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.241
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGMNENDLF VGDDAEARSG ILTLDYPMEH GVVSNWDDME KIWYHTFYSE LRVAPEEHPV LLTEAPLNPK ADREKMTQIM FETFAVPSMY IGMQAALSLH
101: ASGRTTGTVL DSGDGVSYIV PIYEGSALPH AILRLDLAGR HLTNYLMKIM MERGYTSAER EVVRDIKEQF GYIALDYEQE MEKATKSSAI DRTYELPDGQ
201: VITIGAERFR CPEVLFQPSL IGMETSGIHE KTYNSIMKCD DDIRKDLYGN IVLSGGTTMF RGIEERMTKE INALAAANMR IKIVAPPERK YSVWIGGSIL
301: ASLSTYEQMW ITKAEYEENG PAIVHTKCF
101: ASGRTTGTVL DSGDGVSYIV PIYEGSALPH AILRLDLAGR HLTNYLMKIM MERGYTSAER EVVRDIKEQF GYIALDYEQE MEKATKSSAI DRTYELPDGQ
201: VITIGAERFR CPEVLFQPSL IGMETSGIHE KTYNSIMKCD DDIRKDLYGN IVLSGGTTMF RGIEERMTKE INALAAANMR IKIVAPPERK YSVWIGGSIL
301: ASLSTYEQMW ITKAEYEENG PAIVHTKCF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.