CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016895.1-P	Field mustard	cytosol	91.54	100.0
CDY14813	Canola	cytosol	88.52	83.48
CDX73527	Canola	cytosol	71.0	66.57
CDX93360	Canola	cytosol	66.16	66.16
CDX85794	Canola	cytosol	70.39	66.01
CDY40061	Canola	cytosol	70.39	66.01
CDY30296	Canola	cytosol	70.39	66.01
CDY31972	Canola	cytosol	70.39	66.01
CDY65255	Canola	cytosol	65.86	65.86
CDY01102	Canola	cytosol	71.6	62.86
CDY08455	Canola	cytosol	71.3	62.6
CDX76191	Canola	cytosol	71.0	62.33
CDX78202	Canola	cytosol	71.0	62.33
CDY30846	Canola	cytosol	70.69	62.07
CDX87810	Canola	cytosol	70.39	61.8
CDY53444	Canola	cytosol	70.39	61.8
CDX69885	Canola	cytosol	70.39	61.8
CDY21607	Canola	cytosol	70.39	61.8
AT2G42100.1	Thale cress	cytosol	70.39	61.64
CDX99111	Canola	cytosol	70.09	61.54
CDX91373	Canola	cytosol	70.09	61.54
CDX86081	Canola	cytosol	70.09	61.54
CDX88698	Canola	cytosol	70.09	61.54
CDX71119	Canola	cytosol	70.09	61.54
CDX82985	Canola	cytosol	70.09	61.54
CDX74944	Canola	cytosol	70.09	61.54
CDY48688	Canola	cytosol	63.14	61.47
CDY38066	Canola	cytosol	69.79	61.27
CDY56544	Canola	cytosol	69.79	61.27
CDY21777	Canola	cytosol	69.79	61.27
CDX81140	Canola	cytosol	69.79	61.27
CDY18545	Canola	cytosol	68.88	60.48
CDY61982	Canola	cytosol	68.88	60.48
CDX82326	Canola	cytosol	68.88	60.48
CDX95498	Canola	cytosol	68.88	60.48
CDX92272	Canola	cytosol	68.88	60.48
CDY07779	Canola	cytosol	63.14	59.38
AT2G42170.3	Thale cress	cytosol	58.91	59.27
CDX92271	Canola	cytosol	56.19	58.68
CDX99315	Canola	cytosol	57.1	58.51
CDX94448	Canola	cytosol	67.67	57.88
CDX79746	Canola	cytosol	63.14	56.18
AT2G42090.1	Thale cress	cytosol	59.82	54.1
CDY71336	Canola	cytosol	41.09	49.45
CDX67573	Canola	cytosol	41.09	44.74
CDY33033	Canola	nucleus	55.89	34.2
CDX80274	Canola	nucleus	54.68	32.97
CDY00172	Canola	cytosol	38.67	32.9
CDY20066	Canola	cytosol	38.67	32.9
CDY13674	Canola	cytosol	38.67	32.41
CDY52404	Canola	cytosol	38.67	32.41
CDX67843	Canola	cytosol	32.02	29.44
CDY56730	Canola	cytosol	32.02	29.44
CDY62715	Canola	cytosol	31.42	28.65
CDX71774	Canola	cytosol	30.82	28.57
CDX96721	Canola	cytosol	37.46	28.31
CDX83847	Canola	cytosol	37.46	28.25
CDY19213	Canola	cytosol	37.16	27.83
CDY26159	Canola	cytosol	37.16	27.83
CDY52344	Canola	cytosol	32.02	26.3
CDY21087	Canola	cytosol	33.84	26.23
CDY34585	Canola	cytosol	33.53	26.0
CDX98005	Canola	cytosol	33.23	25.76
CDY19392	Canola	cytosol	32.93	25.53
CDY42404	Canola	cytosol	30.21	23.42

Protein Annotations

EnsemblPlants:CDY06885	EnsemblPlantsGene:GSBRNA2T00123170001	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin_CS
PANTHER:PTHR11937	PANTHER:PTHR11937:SF266	PFAM:PF00022	PRINTS:PR00190	ProteinID:CDY06885	ProteinID:CDY06885.1
ScanProsite:PS00432	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0004EDD4F7	MapMan:35.1	:

Description

BnaA04g24300D

Coordinates

chrLK031974:-:19964..23210

Molecular Weight (calculated)

36789.2 Da

IEP (calculated)

5.885

GRAVY (calculated)

-0.249

Length

331 amino acids

Sequence
(BLAST)

001: MNIALLQGIK NYWRPAATRT SFGADDTDMV PIVCDNGTGM VKAGLARDDE PSAVFPSIAG RPRHMEQINN WDDMEKIWHH TFYNELRVAP EKHPVLLGEA
101: PLTPKANREK ITQIMFETFG VPKLYVANEA ILSLYASGRT TGIVVDSGDG VSHTVPIFEG YPLPQAISRL DLAGRDITDY LTKIMMERGY TYTTTAEREV
201: VRDIKEKLGY IALDHDQEMK KATASSAIDR TYELPDGQVC DVDIRKDLFG NIVLSGGTTM FPGIADRMSK EMAAVAPAGM KLKHVVGFER KNINVWIGGA
301: ILASLDSFQQ MWVTKAEYDE NGPGIIHRKC F

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.