CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020319.1-P	Field mustard	cytosol	100.0	100.0
CDY53444	Canola	cytosol	100.0	90.19
CDX82985	Canola	cytosol	99.71	89.92
CDX71119	Canola	cytosol	99.41	89.66
CDX99111	Canola	cytosol	99.41	89.66
CDX88698	Canola	cytosol	99.41	89.66
CDX86081	Canola	cytosol	99.41	89.66
CDY21777	Canola	cytosol	99.12	89.39
CDY38066	Canola	cytosol	98.82	89.12
AT5G59370.2	Thale cress	cytosol	98.53	88.86
CDX73527	Canola	cytosol	91.18	87.82
VIT_13s0019g01240.t01	Wine grape	cytosol	96.47	87.0
KRH10268	Soybean	mitochondrion, nucleus	96.47	87.0
CDX91373	Canola	cytosol	96.47	87.0
CDX74944	Canola	cytosol	96.47	87.0
CDX78202	Canola	cytosol	96.47	87.0
KRH38098	Soybean	cytosol	96.18	86.74
CDX76191	Canola	cytosol	96.18	86.74
CDY65255	Canola	cytosol	84.41	86.71
CDY08455	Canola	cytosol	95.88	86.47
CDY01102	Canola	cytosol	95.88	86.47
KRH71847	Soybean	endoplasmic reticulum, nucleus	95.88	86.47
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.88	86.47
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	95.88	86.47
VIT_06s0004g04570.t01	Wine grape	cytosol	95.59	86.44
CDX93360	Canola	cytosol	84.12	86.4
KRG95386	Soybean	cytosol	95.59	86.21
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.59	86.21
CDY30846	Canola	cytosol	95.59	86.21
KRH70465	Soybean	mitochondrion, nucleus	95.59	86.21
KRG93168	Soybean	mitochondrion, nucleus	95.59	86.21
GSMUA_AchrUn_...	Banana	plasma membrane	95.59	86.21
KRH01660	Soybean	mitochondrion, nucleus	95.59	86.21
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	95.59	86.21
VIT_08s0007g06520.t01	Wine grape	cytosol	95.29	85.94
CDY40061	Canola	cytosol	88.82	85.55
CDY30296	Canola	cytosol	88.82	85.55
CDY31972	Canola	cytosol	88.82	85.55
CDX85794	Canola	cytosol	88.82	85.55
CDY07779	Canola	cytosol	88.53	85.51
CDX69885	Canola	cytosol	94.12	84.88
CDY21607	Canola	cytosol	94.12	84.88
Solyc09g010750.1.1	Tomato	cytosol	44.41	84.36
CDX81140	Canola	cytosol	93.53	84.35
CDY56544	Canola	cytosol	93.53	84.35
Solyc10g086460.1.1	Tomato	unclear	93.24	84.08
GSMUA_Achr10P...	Banana	cytosol	65.0	84.03
PGSC0003DMT400049429	Potato	cytosol	92.94	83.82
PGSC0003DMT400023026	Potato	cytosol	92.65	83.55
CDX87810	Canola	cytosol	90.88	81.96
CDX94448	Canola	cytosol	92.94	81.65
CDY61982	Canola	cytosol	90.29	81.43
CDY18545	Canola	cytosol	90.29	81.43
CDX95498	Canola	cytosol	90.29	81.43
CDX92272	Canola	cytosol	90.29	81.43
CDX82326	Canola	cytosol	90.0	81.17
GSMUA_Achr7P18630_001	Banana	cytosol	76.18	80.94
CDX79746	Canola	cytosol	88.53	80.91
CDX99315	Canola	cytosol	75.88	79.88
CDX92271	Canola	cytosol	73.53	78.86
CDY71336	Canola	cytosol	61.18	75.64
KRH24799	Soybean	cytosol	90.88	75.37
CDX67573	Canola	cytosol	60.29	67.43
CDY14813	Canola	cytosol	66.18	64.1
CDY06885	Canola	cytosol	61.47	63.14
CDY33033	Canola	nucleus	90.0	56.56
CDX80274	Canola	nucleus	88.53	54.83
CDY00172	Canola	cytosol	43.24	37.79
CDY20066	Canola	cytosol	43.24	37.79
CDY52404	Canola	cytosol	43.53	37.47
CDY13674	Canola	cytosol	43.53	37.47
CDY56730	Canola	cytosol	37.94	35.83
CDX67843	Canola	cytosol	37.94	35.83
CDY62715	Canola	cytosol	38.24	35.81
CDX71774	Canola	cytosol	37.06	35.29
CDX83847	Canola	cytosol	43.24	33.49
CDY26159	Canola	cytosol	43.53	33.48
CDY19213	Canola	cytosol	43.53	33.48
CDX96721	Canola	cytosol	42.94	33.33
CDY52344	Canola	cytosol	38.53	32.51
CDY21087	Canola	cytosol	37.06	29.51
CDY34585	Canola	cytosol	36.76	29.27
CDX98005	Canola	cytosol	36.47	29.04
CDY19392	Canola	cytosol	36.18	28.81
CDY42404	Canola	cytosol	30.88	24.59

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	GO:A0A078IHT3	UniProt:A0A078IHT3	InterPro:Actin
InterPro:Actin/actin-like_CS	InterPro:Actin_CS	EnsemblPlants:CDY48688	ProteinID:CDY48688	ProteinID:CDY48688.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00091568001	PFAM:PF00022	PRINTS:PR00190
ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	SMART:SM00268	SUPFAM:SSF53067
UniParc:UPI000254366D	:	:	:	:	:

Description

BnaC02g10000DBnaC02g10000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHT3]

Coordinates

chrLK032786:-:104486..106850

Molecular Weight (calculated)

37302.8 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.177

Length

340 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKREHPVLL TEAPLNPKAN REKMTQIMFE TFNAPAMYVA
101: IQAVLSLYAS GRTTGIVLDS GDGVSHTVPI YEGYALPHAI LRLDLAGRDL TDYLMKILTE RGYSFTTTAE REIVRDMKEK LSYIALDYEQ ELETSNTSSS
201: VDKSFELPDG QVITIGAERF RCPEVLFQPS MIGMENPGIH ETTYNSIMKC DVDIRKDLYG NIVLSGGTTM FGGIGDRMSK EITALAPSSM KIKVVAPPER
301: KYSVWIGGSI LASLSTFQQM WIAKAEYDES GPSIVHRKCF

Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.