Factsheet for PGSC0003DMT400023026

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010254
PGSC0003DMT400023026
PGSC0003DMT400049429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37620.1	PGSC0003DMT400010254	AT2G23420.1	21798944
AT2G37620.1	PGSC0003DMT400023026	AT2G37620.1	21798944
AT2G37620.1	PGSC0003DMT400049429	AT2G37620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	66.84	95.82
GSMUA_AchrUn_...	Banana	plasma membrane	94.96	94.96
AT2G37620.1	Thale cress	cytosol	94.69	94.69
AT3G53750.2	Thale cress	cytosol	94.69	94.69
PGSC0003DMT400049429	Potato	cytosol	94.69	94.69
PGSC0003DMT400060225	Potato	cytosol	94.69	94.69
Bra014865.1-P	Field mustard	cytosol	94.43	94.43
CDX76191	Canola	cytosol	94.43	94.43
CDX74944	Canola	cytosol	94.43	94.43
CDX91373	Canola	cytosol	94.43	94.43
PGSC0003DMT400071331	Potato	cytosol	94.43	94.43
Bra000010.1-P	Field mustard	cytosol	94.43	94.43
PGSC0003DMT400076499	Potato	cytosol	48.28	94.3
Bra007025.1-P	Field mustard	cytosol	94.16	94.16
PGSC0003DMT400060953	Potato	cytosol	94.16	94.16
CDX78202	Canola	cytosol	94.16	94.16
AT3G12110.1	Thale cress	cytosol	94.16	94.16
Bra017166.1-P	Field mustard	cytosol	93.9	93.9
CDY30846	Canola	cytosol	93.9	93.9
Bra034778.1-P	Field mustard	cytosol	93.9	93.9
CDY01102	Canola	cytosol	93.9	93.9
PGSC0003DMT400077954	Potato	cytosol	93.9	93.9
Solyc09g010750.1.1	Tomato	cytosol	44.56	93.85
CDX73527	Canola	cytosol	87.8	93.77
CDY07779	Canola	cytosol	87.53	93.75
CDX93360	Canola	cytosol	82.23	93.66
AT5G59370.2	Thale cress	cytosol	93.63	93.63
CDX82985	Canola	cytosol	93.63	93.63
Bra033819.1-P	Field mustard	cytosol	93.63	93.63
PGSC0003DMT400047481	Potato	cytosol	93.63	93.63
CDY08455	Canola	cytosol	93.63	93.63
Bra005178.1-P	Field mustard	cytosol	87.8	93.5
CDX99111	Canola	cytosol	93.37	93.37
CDY53444	Canola	cytosol	93.37	93.37
PGSC0003DMT400010174	Potato	cytosol	93.37	93.37
Bra018210.1-P	Field mustard	cytosol	93.37	93.37
CDX71119	Canola	cytosol	93.37	93.37
CDX88698	Canola	cytosol	93.37	93.37
CDX86081	Canola	cytosol	93.37	93.37
AT3G46520.2	Thale cress	cytosol	93.37	93.37
CDY65255	Canola	cytosol	81.96	93.35
Bra019486.1-P	Field mustard	cytosol	93.1	93.1
CDY38066	Canola	cytosol	93.1	93.1
CDY21777	Canola	cytosol	93.1	93.1
Bra006719.1-P	Field mustard	cytosol	81.96	93.07
CDY48688	Canola	cytosol	83.55	92.65
Bra020319.1-P	Field mustard	cytosol	83.55	92.65
PGSC0003DMT400001169	Potato	cytosol	92.84	92.59
GSMUA_Achr7P18630_001	Banana	cytosol	77.72	91.56
CDX94448	Canola	cytosol	91.51	89.15
CDX79746	Canola	cytosol	87.53	88.71
Bra003156.1-P	Field mustard	cytosol	46.95	85.92
PGSC0003DMT400076501	Potato	cytosol	44.83	84.5
PGSC0003DMT400087294	Potato	mitochondrion	55.97	77.01
CDY71336	Canola	cytosol	53.85	73.82
PGSC0003DMT400022210	Potato	cytosol	67.9	69.57
PGSC0003DMT400022205	Potato	cytosol	65.78	67.76
PGSC0003DMT400074882	Potato	cytosol	66.31	67.57
CDX67573	Canola	cytosol	53.85	66.78
PGSC0003DMT400074887	Potato	cytosol	62.6	63.78
PGSC0003DMT400088088	Potato	cytosol	32.36	62.89
Bra002571.1-P	Field mustard	nucleus	93.1	58.02
CDY33033	Canola	nucleus	75.86	52.87
CDX80274	Canola	nucleus	74.54	51.18
PGSC0003DMT400052197	Potato	cytosol	44.3	41.85
PGSC0003DMT400019210	Potato	cytosol	37.4	39.17
PGSC0003DMT400056033	Potato	cytosol	41.91	36.32
PGSC0003DMT400027956	Potato	cytosol	39.79	34.8
PGSC0003DMT400038724	Potato	cytosol	32.1	27.63

Protein Annotations

EntrezGene:102606253	MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	ProteinID:AAB40100	ProteinID:AAB40100.1
InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	ProteinID:CAA39279	ProteinID:CAA39279.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	UniProt:M1AHM5	PFAM:PF00022	EnsemblPlantsGene:PGSC0003DMG400008912	PGSC:PGSC0003DMG400008912
EnsemblPlants:PGSC0003DMT400023026	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937
PANTHER:PTHR11937:SF355	SMART:SM00268	SUPFAM:SSF53067	EMBL:U60487	UniParc:UPI000294E068	EMBL:X55750
RefSeq:XP_006341033.1	:	:	:	:	:

Description

Actin-71 [Source:PGSC_GENE;Acc:PGSC0003DMG400008912]

Coordinates

chr9:-:1862220..1865174

Molecular Weight (calculated)

41720.2 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.165

Length

377 amino acids

Sequence
(BLAST)

001: MADVEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHAGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTEY MVKILTERGY
201: SFTTTAEKEI VRDVKEKLAY LALDFEQELE TTKTGSAVEK NYELPDGQVI TIGAERFRCP EVLYQPSLIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIQ ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.