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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • cytosol 5
  • mitochondrion 2
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 mitochondrion: 24351685
msms PMID: 24351685 doi
F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller
Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d019635_P001 Maize cytosol 35.77 71.01
Zm00001d016605_P001 Maize cytosol 39.42 68.35
Zm00001d016508_P001 Maize cytosol 33.58 66.67
GSMUA_Achr8P16150_001 Banana cytosol 78.83 57.29
GSMUA_Achr7P10410_001 Banana cytosol 78.83 57.29
GSMUA_Achr2P16160_001 Banana cytosol 78.83 57.29
GSMUA_Achr10P... Banana cytosol 57.3 57.09
Os03t0836000-01 Rice plasma membrane, plastid 78.47 57.03
GSMUA_Achr3P02960_001 Banana cytosol 78.47 57.03
GSMUA_Achr9P03170_001 Banana cytosol 78.1 56.91
HORVU5Hr1G117900.1 Barley cytosol 78.1 56.76
TraesCS5B01G516100.1 Wheat cytosol 78.1 56.76
TraesCS5D01G516200.1 Wheat cytosol 78.1 56.76
TraesCS5B01G124100.1 Wheat cytosol 78.1 56.76
Os11t0163100-01 Rice nucleus, plasma membrane, plastid 78.1 56.76
PGSC0003DMT400010174 Potato cytosol 78.1 56.76
PGSC0003DMT400047481 Potato cytosol 78.1 56.76
GSMUA_Achr8P02660_001 Banana cytosol 78.1 56.76
GSMUA_Achr6P25350_001 Banana cytosol 78.1 56.76
GSMUA_Achr10P... Banana cytosol 78.1 56.76
EES08028 Sorghum cytosol 77.74 56.5
Zm00001d053177_P004 Maize cytosol 77.74 56.5
PGSC0003DMT400071331 Potato cytosol 77.74 56.5
Os05t0106600-01 Rice nucleus 77.74 56.5
PGSC0003DMT400060953 Potato cytosol 77.74 56.5
KXG23031 Sorghum cytosol 77.74 56.5
Zm00001d035720_P002 Maize cytosol 77.74 56.5
KXG21029 Sorghum cytosol 77.74 56.5
PGSC0003DMT400060225 Potato cytosol 77.74 56.5
Zm00001d011086_P005 Maize cytosol 77.74 56.5
TraesCS4A01G356100.2 Wheat cytosol 78.1 56.46
PGSC0003DMT400049429 Potato cytosol 77.37 56.23
PGSC0003DMT400077954 Potato cytosol 77.37 56.23
EER90564 Sorghum cytosol 77.37 56.23
TraesCS1B01G024500.1 Wheat golgi, nucleus 77.37 56.23
TraesCS1D01G020000.1 Wheat cytosol 77.37 56.23
PGSC0003DMT400001169 Potato cytosol 77.37 56.08
PGSC0003DMT400023026 Potato cytosol 77.01 55.97
Zm00001d019396_P001 Maize cytosol 34.31 55.95
GSMUA_Achr9P08850_001 Banana cytosol 71.17 55.87
EES01810 Sorghum cytosol 76.64 55.85
GSMUA_Achr5P29190_001 Banana cytosol 70.8 55.75
GSMUA_Achr11P... Banana cytosol 76.64 55.7
GSMUA_Achr11P... Banana cytosol 70.8 55.59
Zm00001d012277_P001 Maize cytosol 76.28 55.59
Zm00001d042731_P002 Maize extracellular, plasma membrane, plastid 76.28 55.59
PGSC0003DMT400076499 Potato cytosol 39.05 55.44
Os01t0964133-01 Rice plasma membrane 76.28 55.44
Zm00001d035722_P007 Maize plasma membrane 77.74 55.32
Os05t0438800-01 Rice plasma membrane, plastid 75.55 55.05
EES19603 Sorghum cytosol 75.18 54.79
HORVU1Hr1G074350.1 Barley cytosol 75.18 54.79
TraesCS1D01G274400.1 Wheat cytosol 75.18 54.79
TraesCS1B01G283900.1 Wheat cytosol 75.18 54.79
TraesCS1A01G274400.1 Wheat golgi 75.18 54.79
PGSC0003DMT400076501 Potato cytosol 39.78 54.5
Zm00001d010159_P002 Maize extracellular, plasma membrane 74.45 54.26
TraesCS5D01G132200.1 Wheat golgi 73.36 54.18
Zm00001d034761_P002 Maize cytosol 77.37 54.08
TraesCS5A01G124300.2 Wheat golgi 78.1 52.32
HORVU1Hr1G002840.6 Barley plasma membrane 77.37 52.09
TraesCS1A01G020500.2 Wheat cytosol 77.37 52.09
Os01t0866100-01 Rice plasma membrane 37.59 50.74
PGSC0003DMT400074882 Potato cytosol 66.06 48.92
PGSC0003DMT400022210 Potato cytosol 65.69 48.91
GSMUA_Achr2P08030_001 Banana cytosol 62.41 48.86
PGSC0003DMT400022205 Potato cytosol 64.6 48.36
GSMUA_Achr6P34320_001 Banana cytosol 43.07 48.36
KXG21030 Sorghum cytosol 68.61 48.33
Zm00001d011087_P001 Maize plastid 77.74 46.92
PGSC0003DMT400074887 Potato cytosol 61.68 45.68
HORVU5Hr1G039850.3 Barley mitochondrion 77.37 45.59
Zm00001d003298_P001 Maize cytosol 42.7 44.49
Zm00001d008746_P001 Maize cytosol 41.61 41.45
PGSC0003DMT400088088 Potato cytosol 29.2 41.24
Zm00001d004087_P001 Maize cytosol 32.48 41.2
Zm00001d007792_P001 Maize cytosol 37.23 38.64
Zm00001d004855_P002 Maize cytoskeleton, cytosol, nucleus 77.74 36.1
PGSC0003DMT400019210 Potato cytosol 39.42 30.0
Zm00001d034421_P004 Maize plastid 46.72 27.35
PGSC0003DMT400056033 Potato cytosol 42.34 26.67
PGSC0003DMT400052197 Potato cytosol 38.32 26.32
PGSC0003DMT400027956 Potato cytosol 35.04 22.27
PGSC0003DMT400038724 Potato cytosol 31.02 19.41
Protein Annotations
EnsemblPlants:PGSC0003DMT400087294EnsemblPlantsGene:PGSC0003DMG400036865Gene3D:3.30.420.40Gene3D:3.90.640.10InterPro:ActinInterPro:Actin/actin-like_CS
PANTHER:PTHR11937PANTHER:PTHR11937:SF361PFAM:PF00022PGSC:PGSC0003DMG400036865PRINTS:PR00190ScanProsite:PS01132
SMART:SM00268SUPFAM:SSF53067UniParc:UPI000295BB01UniProt:M1DDJ3MapMan:35.1:
Description
Actin, cytoplasmic 2-like isoform 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400036865]
Coordinates
chr4:-:59686775..59688160
Molecular Weight (calculated)
30590.8 Da
IEP (calculated)
7.010
GRAVY (calculated)
-0.226
Length
274 amino acids
Sequence
(BLAST)
001: MTKAGFAGDD SPRAVFPSII GRPRHTGVMV GMEQKAAYVG DQALSKRGIL TLKHPIERGV VRNWDDMEEL WHYTFYHELR VAPEEHSILL TEAPFNPKAN
101: REKMTQVMFE TFNVPAMYVE NQAVLSLLAN GSTTVEKGYE VPSDHIINIG AERFRCPEAL FQPSLVGMEA TGIHEKAYNS IMRCNVDIRK DLFANIVLSG
201: GSTLFPGLAE RMTKEITALA PSHTKIKVFA PPDRKYSTWI GGPVLASLST FQQMCITNSE YDEFGPSIVH RKCP
Best Arabidopsis Sequence Match ( AT3G46520.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYEQELE TSKTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT12Actin-12 [Source:UniProtKB/Swiss-Prot;Acc:P53497]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.