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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0125800-01
Os01t0583100-01
Os01t0866100-01
Os01t0964133-01
Os03t0780400-01
Os03t0836000-01
Os05t0106600-01
Os05t0438800-01
Os05t0537400-00
Os05t0592800-02
Os07t0297500-00
Os10t0521100-01
Os11t0163100-01
Os12t0628100-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 Os01t0583100-01 AT1G72770.1 19033529
AT1G49240.1 Os05t0537400-00 AT1G72770.1 19033529
AT1G49240.1 Os05t0592800-02 AT1G72770.1 19033529
AT5G09810.1 Os03t0780400-01 AT2G31200.1 21798944
AT5G09810.1 Os07t0297500-00 AT2G31200.1 21798944
AT5G09810.1 Os10t0521100-01 AT2G31200.1 21798944
AT5G09810.1 Os12t0628100-01 AT2G31200.1 21798944
AT5G09810.1 Os01t0125800-01 AT3G18060.1 21798944
AT5G09810.1 Os01t0866100-01 AT5G09810.1 21798944
AT5G09810.1 Os01t0964133-01 AT5G09810.1 21798944
AT5G09810.1 Os03t0836000-01 AT5G09810.1 21798944
AT5G09810.1 Os05t0106600-01 AT5G09810.1 21798944
AT5G09810.1 Os05t0438800-01 AT5G09810.1 21798944
AT5G09810.1 Os11t0163100-01 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU5Hr1G117900.1 Barley cytosol 98.67 98.67
TraesCS5D01G516200.1 Wheat cytosol 98.67 98.67
TraesCS5B01G516100.1 Wheat cytosol 98.67 98.67
EER90564 Sorghum cytosol 98.41 98.41
TraesCS4A01G356100.2 Wheat cytosol 98.67 98.15
GSMUA_Achr9P08850_001 Banana cytosol 90.19 97.42
AT5G09810.1 Thale cress cytosol 97.35 97.35
GSMUA_Achr6P25350_001 Banana cytosol 97.35 97.35
Os11t0163100-01 Rice nucleus, plasma membrane, plastid 97.35 97.35
CDX69885 Canola cytosol 97.35 97.35
CDY21607 Canola cytosol 97.35 97.35
CDY31972 Canola cytosol 90.98 97.17
CDY40061 Canola cytosol 90.98 97.17
CDY30296 Canola cytosol 90.98 97.17
CDX85794 Canola cytosol 90.98 97.17
GSMUA_Achr8P02660_001 Banana cytosol 97.08 97.08
Bra028615.1-P Field mustard cytosol 97.08 97.08
Bra009081.1-P Field mustard cytosol 90.72 96.88
GSMUA_Achr5P29190_001 Banana cytosol 89.39 96.84
VIT_12s0178g00200.t01 Wine grape cytosol 96.82 96.82
Os05t0106600-01 Rice nucleus 96.82 96.82
GSMUA_Achr8P16150_001 Banana cytosol 96.82 96.82
GSMUA_Achr3P02960_001 Banana cytosol 96.82 96.82
GSMUA_Achr2P16160_001 Banana cytosol 96.82 96.82
GSMUA_Achr10P... Banana cytosol 96.82 96.82
CDY56544 Canola cytosol 96.82 96.82
CDX81140 Canola cytosol 96.82 96.82
KRH43389 Soybean cytosol 96.55 96.55
KRH59535 Soybean cytosol 96.55 96.55
Bra006033.1-P Field mustard cytosol 96.55 96.55
GSMUA_Achr9P03170_001 Banana cytosol 96.29 96.54
GSMUA_Achr6P34320_001 Banana cytosol 62.33 96.31
Solyc03g078400.2.1 Tomato nucleus, plastid 96.29 96.29
PGSC0003DMT400047481 Potato cytosol 96.29 96.29
GSMUA_Achr7P10410_001 Banana cytosol 96.29 96.29
Os10t0510000-01 Rice plastid 96.29 96.29
KRH64098 Soybean cytosol 96.29 96.29
KRH53856 Soybean endoplasmic reticulum, mitochondrion 84.62 96.08
Os03t0718100-01 Rice plasma membrane 96.02 96.02
PGSC0003DMT400010174 Potato cytosol 96.02 96.02
Solyc01g104770.2.1 Tomato nucleus 96.02 96.02
Solyc11g005330.1.1 Tomato nucleus 96.02 96.02
Os01t0964133-01 Rice plasma membrane 95.76 95.76
GSMUA_Achr11P... Banana cytosol 88.59 95.7
Os12t0163700-01 Rice plastid 91.51 95.04
GSMUA_Achr11P... Banana cytosol 94.69 94.69
Zm00001d034761_P002 Maize cytosol 98.41 94.64
PGSC0003DMT400076499 Potato cytosol 48.01 93.78
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 93.63 93.63
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 93.63 93.63
Os05t0438800-01 Rice plasma membrane, plastid 93.1 93.35
Solyc04g071260.2.1 Tomato plastid 92.31 92.31
AT1G49240.1 Thale cress cytosol 90.72 90.72
CDX82326 Canola cytosol 90.72 90.72
Bra022356.1-P Field mustard cytosol 77.72 90.71
CDX99315 Canola cytosol 77.72 90.71
AT3G18780.3 Thale cress cytosol 90.45 90.45
CDX92272 Canola cytosol 90.45 90.45
CDX95498 Canola cytosol 90.45 90.45
CDY18545 Canola cytosol 90.45 90.45
CDY61982 Canola cytosol 90.45 90.45
CDX92271 Canola cytosol 75.33 89.59
PGSC0003DMT400076501 Potato cytosol 47.21 89.0
GSMUA_Achr10P... Banana cytosol 62.86 86.18
Bra037560.1-P Field mustard cytoskeleton, cytosol 77.19 82.44
VIT_04s0044g00580.t01 Wine grape extracellular 96.82 79.35
PGSC0003DMT400087294 Potato mitochondrion 57.03 78.47
Os01t0866100-01 Rice plasma membrane 38.46 71.43
PGSC0003DMT400022210 Potato cytosol 68.97 70.65
PGSC0003DMT400022205 Potato cytosol 66.84 68.85
PGSC0003DMT400074882 Potato cytosol 67.37 68.65
PGSC0003DMT400074887 Potato cytosol 64.19 65.41
PGSC0003DMT400088088 Potato cytosol 32.63 63.4
Os03t0783000-01 Rice cytosol, nucleus 35.01 36.67
Os08t0137200-01 Rice nucleus 42.18 35.89
Os08t0128300-01 Rice cytosol 16.45 34.44
Os02t0596900-01 Rice cytosol 38.46 33.88
Os01t0269900-01 Rice cytosol 32.89 28.9
Protein Annotations
MapMan:20.2.1Gene3D:3.30.420.40Gene3D:3.90.640.10EntrezGene:4334702ProteinID:AAR88568.1ProteinID:ABF99754.1
EMBL:AK063598InterPro:ActinInterPro:Actin/actin-like_CSInterPro:Actin_CSProteinID:BAF13736.1ProteinID:BAS87253.1
ProteinID:EEE60254.1GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856EnsemblPlantsGene:Os03g0836000EnsemblPlants:Os03t0836000-01
PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132PANTHER:PTHR11937
PANTHER:PTHR11937:SF252UniProt:Q10AZ4SMART:SM00268SUPFAM:SSF53067UniParc:UPI0000232A69RefSeq:XP_015629761.1
Description
Actin 3Similar to Actin 7 (Actin 2). (Os03t0836000-01)
Coordinates
chr3:-:35125628..35129314
Molecular Weight (calculated)
41708.1 Da
IEP (calculated)
5.162
GRAVY (calculated)
-0.181
Length
377 amino acids
Sequence
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VTHTVPIYEG YALPHAILRL DLAGRDLTDC LMKILTERGY
201: SFTTTAEREI VRDIKEKLAY IALDYEQELE TAKSSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KGEYDESGPS IVHRKCF
Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF
Arabidopsis Description
ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.