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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 18557835
mitochondrion: 19010998
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0125800-01
Os01t0583100-01
Os01t0866100-01
Os01t0964133-01
Os03t0780400-01
Os03t0836000-01
Os05t0106600-01
Os05t0438800-01
Os05t0537400-00
Os05t0592800-02
Os07t0297500-00
Os10t0521100-01
Os11t0163100-01
Os12t0628100-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 Os01t0583100-01 AT1G72770.1 19033529
AT1G49240.1 Os05t0537400-00 AT1G72770.1 19033529
AT1G49240.1 Os05t0592800-02 AT1G72770.1 19033529
AT5G09810.1 Os03t0780400-01 AT2G31200.1 21798944
AT5G09810.1 Os07t0297500-00 AT2G31200.1 21798944
AT5G09810.1 Os10t0521100-01 AT2G31200.1 21798944
AT5G09810.1 Os12t0628100-01 AT2G31200.1 21798944
AT5G09810.1 Os01t0125800-01 AT3G18060.1 21798944
AT5G09810.1 Os01t0866100-01 AT5G09810.1 21798944
AT5G09810.1 Os01t0964133-01 AT5G09810.1 21798944
AT5G09810.1 Os03t0836000-01 AT5G09810.1 21798944
AT5G09810.1 Os05t0106600-01 AT5G09810.1 21798944
AT5G09810.1 Os05t0438800-01 AT5G09810.1 21798944
AT5G09810.1 Os11t0163100-01 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d019635_P001 Maize cytosol 63.05 92.75
PGSC0003DMT400076499 Potato cytosol 66.01 69.43
Zm00001d003298_P001 Maize cytosol 72.41 55.89
Zm00001d004087_P001 Maize cytosol 48.77 45.83
CDX92271 Canola cytosol 67.98 43.53
CDX99315 Canola cytosol 67.0 42.11
Bra022356.1-P Field mustard cytosol 66.5 41.8
PGSC0003DMT400088088 Potato cytosol 39.41 41.24
Bra037560.1-P Field mustard cytoskeleton, cytosol 67.98 39.09
Os05t0438800-01 Rice plasma membrane, plastid 71.43 38.56
Os03t0836000-01 Rice plasma membrane, plastid 71.43 38.46
CDX81140 Canola cytosol 70.94 38.2
Os05t0106600-01 Rice nucleus 70.94 38.2
Os03t0718100-01 Rice plasma membrane 70.94 38.2
KRH64098 Soybean cytosol 70.94 38.2
KRH59535 Soybean cytosol 70.94 38.2
Os11t0163100-01 Rice nucleus, plasma membrane, plastid 70.94 38.2
KRH43389 Soybean cytosol 70.94 38.2
CDY56544 Canola cytosol 70.94 38.2
AT5G09810.1 Thale cress cytosol 70.94 38.2
CDY21607 Canola cytosol 70.94 38.2
Bra028615.1-P Field mustard cytosol 70.94 38.2
CDX69885 Canola cytosol 70.94 38.2
PGSC0003DMT400047481 Potato cytosol 70.44 37.93
PGSC0003DMT400010174 Potato cytosol 70.44 37.93
Bra006033.1-P Field mustard cytosol 70.44 37.93
Solyc03g078400.2.1 Tomato nucleus, plastid 70.44 37.93
Os01t0964133-01 Rice plasma membrane 70.44 37.93
Solyc11g005330.1.1 Tomato nucleus 70.44 37.93
VIT_12s0178g00200.t01 Wine grape cytosol 70.44 37.93
Solyc01g104770.2.1 Tomato nucleus 69.95 37.67
Os10t0510000-01 Rice plastid 69.95 37.67
PGSC0003DMT400087294 Potato mitochondrion 50.74 37.59
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 69.46 37.4
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 69.46 37.4
AT3G18780.3 Thale cress cytosol 68.47 36.87
CDX92272 Canola cytosol 68.47 36.87
CDX82326 Canola cytosol 68.47 36.87
CDX95498 Canola cytosol 68.47 36.87
CDY18545 Canola cytosol 68.47 36.87
CDY61982 Canola cytosol 68.47 36.87
AT1G49240.1 Thale cress cytosol 67.98 36.6
Solyc04g071260.2.1 Tomato plastid 66.5 35.81
Os12t0163700-01 Rice plastid 62.56 34.99
GSMUA_Achr2P08030_001 Banana cytosol 59.61 34.57
CDY30296 Canola cytosol 59.11 33.99
CDY31972 Canola cytosol 59.11 33.99
CDY40061 Canola cytosol 59.11 33.99
CDX85794 Canola cytosol 59.11 33.99
Bra009081.1-P Field mustard cytosol 58.62 33.71
PGSC0003DMT400074882 Potato cytosol 59.11 32.43
PGSC0003DMT400022205 Potato cytosol 58.13 32.24
Os08t0128300-01 Rice cytosol 28.08 31.67
VIT_04s0044g00580.t01 Wine grape extracellular 70.94 31.3
PGSC0003DMT400022210 Potato cytosol 56.65 31.25
KRH53856 Soybean endoplasmic reticulum, mitochondrion 50.25 30.72
PGSC0003DMT400074887 Potato cytosol 55.17 30.27
Zm00001d034421_P004 Maize plastid 63.05 27.35
Os02t0596900-01 Rice cytosol 30.05 14.25
Os08t0137200-01 Rice nucleus 29.06 13.32
Os03t0783000-01 Rice cytosol, nucleus 22.17 12.5
Os01t0269900-01 Rice cytosol 23.65 11.19
PGSC0003DMT400076501 Potato cytosol 3.45 3.5
Protein Annotations
Gene3D:2.30.36.70MapMan:35.1UniProt:A0A0P0VAT4InterPro:ActinInterPro:Actin/actin-like_CSInterPro:Actin_CS
ProteinID:BAS75382.1GO:GO:0000166GO:GO:0003674GO:GO:0003779GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856
GO:GO:0005885GO:GO:0007015GO:GO:0007275GO:GO:0008150GO:GO:0009987GO:GO:0016043
GO:GO:0034314EnsemblPlantsGene:Os01g0866100EnsemblPlants:Os01t0866100-01PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406
ScanProsite:PS01132PANTHER:PTHR11937PANTHER:PTHR11937:SF205SMART:SM00268SUPFAM:SSF53067UniParc:UPI0000DD8E16
Description
Actin 7Similar to Actin 4. (Os01t0866100-01)
Coordinates
chr1:+:37509885..37513263
Molecular Weight (calculated)
22499.0 Da
IEP (calculated)
5.022
GRAVY (calculated)
-0.127
Length
203 amino acids
Sequence
(BLAST)
001: MAEEDIQPIV CDNGTGMVKA GFAGDDAPRA VFPSIVGRPR HTGVMVGMGQ KDAYVGDEAQ SKRGILTLKY PIEHGIVNNW DDMEKIWHHT FYNELRVAPE
101: EHPVLLTEAP MNPKANREKM TQIMFETFNC PAMYVAIQTM ASHQGIPNVC NGLLCWVSPG NKDVCPCSLK AFCFEFSTSR IAGLNDCTSS FVFSLEDNLF
201: LCT
Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.