Factsheet for Bra022356.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016034.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	Bra016034.1-P	AT1G72770.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99315	Canola	cytosol	98.45	98.45
Zm00001d019635_P001	Maize	cytosol	38.39	89.86
Zm00001d016605_P001	Maize	cytosol	41.8	85.44
AT3G18780.3	Thale cress	cytosol	99.07	84.88
AT1G49240.1	Thale cress	cytosol	98.76	84.62
Zm00001d016508_P001	Maize	cytosol	34.67	81.16
KRH64098	Soybean	cytosol	92.26	79.05
EES08028	Sorghum	cytosol	91.95	78.78
KRH43389	Soybean	cytosol	91.95	78.78
KRH59535	Soybean	cytosol	91.95	78.78
PGSC0003DMT400010174	Potato	cytosol	91.95	78.78
PGSC0003DMT400047481	Potato	cytosol	91.95	78.78
Solyc03g078400.2.1	Tomato	nucleus, plastid	91.95	78.78
Solyc11g005330.1.1	Tomato	nucleus	91.95	78.78
Bra028615.1-P	Field mustard	cytosol	91.64	78.51
HORVU5Hr1G117900.1	Barley	cytosol	91.64	78.51
Os05t0106600-01	Rice	nucleus	91.64	78.51
TraesCS5B01G124100.1	Wheat	cytosol	91.64	78.51
TraesCS5B01G516100.1	Wheat	cytosol	91.64	78.51
TraesCS5D01G516200.1	Wheat	cytosol	91.64	78.51
Zm00001d053177_P004	Maize	cytosol	91.64	78.51
Bra034778.1-P	Field mustard	cytosol	91.33	78.25
GSMUA_Achr6P25350_001	Banana	cytosol	91.33	78.25
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	91.33	78.25
GSMUA_Achr9P03170_001	Banana	cytosol	91.02	78.19
TraesCS4A01G356100.2	Wheat	cytosol	91.64	78.1
Bra006033.1-P	Field mustard	cytosol	91.02	77.98
GSMUA_Achr3P02960_001	Banana	cytosol	91.02	77.98
KXG21029	Sorghum	cytosol	91.02	77.98
Os01t0964133-01	Rice	plasma membrane	91.02	77.98
TraesCS1B01G024500.1	Wheat	golgi, nucleus	91.02	77.98
TraesCS1D01G020000.1	Wheat	cytosol	91.02	77.98
Zm00001d011086_P005	Maize	cytosol	91.02	77.98
Zm00001d035720_P002	Maize	cytosol	91.02	77.98
EER90564	Sorghum	cytosol	90.71	77.72
GSMUA_Achr10P...	Banana	cytosol	90.71	77.72
GSMUA_Achr2P16160_001	Banana	cytosol	90.71	77.72
GSMUA_Achr7P10410_001	Banana	cytosol	90.71	77.72
GSMUA_Achr8P02660_001	Banana	cytosol	90.71	77.72
GSMUA_Achr8P16150_001	Banana	cytosol	90.71	77.72
KXG23031	Sorghum	cytosol	90.71	77.72
Os03t0836000-01	Rice	plasma membrane, plastid	90.71	77.72
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	79.88	77.71
Bra000010.1-P	Field mustard	cytosol	90.4	77.45
Zm00001d019396_P001	Maize	cytosol	40.25	77.38
Bra014865.1-P	Field mustard	cytosol	90.09	77.19
Bra018210.1-P	Field mustard	cytosol	90.09	77.19
Bra019486.1-P	Field mustard	cytosol	90.09	77.19
Bra033819.1-P	Field mustard	cytosol	90.09	77.19
GSMUA_Achr11P...	Banana	cytosol	90.09	77.19
Bra009081.1-P	Field mustard	cytosol	84.21	77.05
Bra007025.1-P	Field mustard	cytosol	89.78	76.92
Zm00001d012277_P001	Maize	cytosol	89.47	76.86
GSMUA_Achr9P08850_001	Banana	cytosol	82.97	76.79
Bra017166.1-P	Field mustard	cytosol	89.47	76.66
GSMUA_Achr11P...	Banana	cytosol	82.66	76.5
GSMUA_Achr5P29190_001	Banana	cytosol	82.35	76.44
Zm00001d035722_P007	Maize	plasma membrane	91.02	76.36
EES01810	Sorghum	cytosol	88.85	76.33
Os05t0438800-01	Rice	plasma membrane, plastid	88.85	76.33
HORVU1Hr1G074350.1	Barley	cytosol	88.54	76.06
TraesCS1A01G274400.1	Wheat	golgi	88.54	76.06
TraesCS1B01G283900.1	Wheat	cytosol	88.54	76.06
TraesCS1D01G274400.1	Wheat	cytosol	88.54	76.06
Bra006719.1-P	Field mustard	cytosol	78.02	75.9
EES19603	Sorghum	cytosol	88.24	75.8
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	88.24	75.8
TraesCS5D01G132200.1	Wheat	golgi	87.0	75.74
Bra005178.1-P	Field mustard	cytosol	82.66	75.42
Bra020319.1-P	Field mustard	cytosol	79.26	75.29
Zm00001d010159_P002	Maize	extracellular, plasma membrane	87.31	75.0
Zm00001d034761_P002	Maize	cytosol	90.71	74.74
GSMUA_Achr10P...	Banana	cytosol	63.47	74.55
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	81.11	74.22
TraesCS5A01G124300.2	Wheat	golgi	91.64	72.37
HORVU1Hr1G002840.6	Barley	plasma membrane	91.02	72.24
TraesCS1A01G020500.2	Wheat	cytosol	91.02	72.24
GSMUA_Achr6P34320_001	Banana	cytosol	53.25	70.49
GSMUA_Achr2P08030_001	Banana	cytosol	72.76	67.14
KXG21030	Sorghum	cytosol	80.81	67.1
Bra003156.1-P	Field mustard	cytosol	42.41	66.5
Os01t0866100-01	Rice	plasma membrane	41.8	66.5
Zm00001d011087_P001	Maize	plastid	91.02	64.76
VIT_04s0044g00580.t01	Wine grape	extracellular	91.95	64.57
Zm00001d008746_P001	Maize	cytosol	54.8	64.36
Zm00001d003298_P001	Maize	cytosol	51.7	63.5
Zm00001d004087_P001	Maize	cytosol	40.87	61.11
HORVU5Hr1G039850.3	Barley	mitochondrion	87.93	61.08
Bra016895.1-P	Field mustard	cytosol	57.28	61.06
Zm00001d007792_P001	Maize	cytosol	47.37	57.95
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	91.33	50.0
Bra002571.1-P	Field mustard	nucleus	89.78	47.93
Bra025243.1-P	Field mustard	cytosol	43.96	38.8
Bra039097.1-P	Field mustard	cytosol	43.34	35.99
Bra003429.1-P	Field mustard	cytosol	38.39	34.44
Zm00001d034421_P004	Maize	plastid	48.92	33.76
Bra016738.1-P	Field mustard	cytosol	38.7	29.27
Bra019815.1-P	Field mustard	cytosol	38.39	29.04
Bra007566.1-P	Field mustard	cytosol	27.86	27.44
Bra030818.1-P	Field mustard	cytosol	15.79	22.97
Bra019816.1-P	Field mustard	nucleus	11.76	10.08

Protein Annotations

EMBL:FJ969844	EnsemblPlants:Bra022356.1	EnsemblPlants:Bra022356.1-P	EnsemblPlantsGene:Bra022356	Gene3D:3.30.420.40	InterPro:Actin
InterPro:Actin_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF355	PFAM:PF00022	PRINTS:PR00190	ProteinID:ACR78201
ProteinID:ACR78201.1	ScanProsite:PS00406	ScanProsite:PS00432	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0002548067
UniProt:M4E0Q9	MapMan:35.1	:	:	:	:

Description

AT3G18780 (E=2e-097) ACT2, DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton

Coordinates

chrA05:-:18205435..18206647

Molecular Weight (calculated)

35545.5 Da

IEP (calculated)

5.389

GRAVY (calculated)

-0.193

Length

323 amino acids

Sequence
(BLAST)

001: MAEADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKAHREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FEGEMETSKS SSSIEKNYEL PDGQVITIGA
201: ERFRCPEVLF QPSFVGMEAA GIHETTYNSI MKCDVDIRKD LYGNIVLSGG TTMFSGIADR MSKEITALAP SSMKIKVVAP PERKYSVWIG GSILASLSTF
301: QQMWISKAEY DEAGPGIVHR KCF

Best Arabidopsis Sequence Match ( AT1G49240.1 )
(BLAST)

001: MADADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFSG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYDEAGPG IVHRKCF

Arabidopsis Description

ACT8Actin-8 [Source:UniProtKB/Swiss-Prot;Acc:Q96293]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.