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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G002840.6
HORVU1Hr1G048450.4
HORVU1Hr1G074350.1
HORVU1Hr1G080290.6
HORVU1Hr1G094840.9
HORVU3Hr1G004510.1
HORVU3Hr1G021490.1
HORVU3Hr1G050340.1
HORVU3Hr1G067360.1
HORVU3Hr1G067380.4
HORVU5Hr1G039850.3
HORVU5Hr1G100770.1
HORVU5Hr1G117900.1
HORVU7Hr1G029040.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 HORVU1Hr1G080290.6 AT1G72770.1 19033529
AT1G49240.1 HORVU1Hr1G094840.9 AT1G72770.1 19033529
AT1G49240.1 HORVU3Hr1G050340.1 AT1G72770.1 19033529
AT1G49240.1 HORVU3Hr1G067360.1 AT1G72770.1 19033529
AT1G49240.1 HORVU3Hr1G067380.4 AT1G72770.1 19033529
AT1G49240.1 HORVU7Hr1G029040.1 AT1G72770.1 19033529
AT5G09810.1 HORVU1Hr1G048450.4 AT2G31200.1 21798944
AT5G09810.1 HORVU5Hr1G100770.1 AT2G31200.1 21798944
AT5G09810.1 HORVU3Hr1G004510.1 AT3G18060.1 21798944
AT5G09810.1 HORVU3Hr1G021490.1 AT3G18060.1 21798944
AT5G09810.1 HORVU1Hr1G002840.6 AT5G09810.1 21798944
AT5G09810.1 HORVU1Hr1G074350.1 AT5G09810.1 21798944
AT5G09810.1 HORVU5Hr1G039850.3 AT5G09810.1 21798944
AT5G09810.1 HORVU5Hr1G117900.1 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G274400.1 Wheat golgi 100.0 100.0
TraesCS1B01G283900.1 Wheat cytosol 100.0 100.0
TraesCS1D01G274400.1 Wheat cytosol 100.0 100.0
Os05t0438800-01 Rice plasma membrane, plastid 97.61 97.61
EES19603 Sorghum cytosol 97.07 97.07
Zm00001d010159_P002 Maize extracellular, plasma membrane 96.81 96.81
HORVU1Hr1G047440.2 Barley cytosol 93.88 93.63
HORVU5Hr1G117900.1 Barley cytosol 93.62 93.37
CDX85794 Canola cytosol 87.5 93.2
CDY40061 Canola cytosol 87.5 93.2
Bra028615.1-P Field mustard cytosol 93.35 93.1
AT5G09810.1 Thale cress cytosol 93.35 93.1
CDX69885 Canola cytosol 93.09 92.84
VIT_12s0178g00200.t01 Wine grape cytosol 93.09 92.84
CDY21607 Canola cytosol 93.09 92.84
GSMUA_Achr9P03170_001 Banana cytosol 92.82 92.82
CDY30296 Canola cytosol 86.97 92.63
CDY31972 Canola cytosol 86.97 92.63
PGSC0003DMT400010174 Potato cytosol 92.82 92.57
PGSC0003DMT400047481 Potato cytosol 92.82 92.57
Solyc11g005330.1.1 Tomato nucleus 92.82 92.57
Solyc03g078400.2.1 Tomato nucleus, plastid 92.82 92.57
KRH59535 Soybean cytosol 92.82 92.57
KRH43389 Soybean cytosol 92.82 92.57
GSMUA_Achr5P29190_001 Banana cytosol 85.64 92.53
Bra009081.1-P Field mustard cytosol 86.7 92.35
GSMUA_Achr10P... Banana cytosol 92.55 92.31
KRH64098 Soybean cytosol 92.55 92.31
GSMUA_Achr8P16150_001 Banana cytosol 92.55 92.31
GSMUA_Achr6P25350_001 Banana cytosol 92.55 92.31
CDX81140 Canola cytosol 92.55 92.31
CDY56544 Canola cytosol 92.55 92.31
GSMUA_Achr3P02960_001 Banana cytosol 92.55 92.31
KRH53856 Soybean endoplasmic reticulum, mitochondrion 81.38 92.17
GSMUA_Achr2P16160_001 Banana cytosol 92.29 92.04
Bra006033.1-P Field mustard cytosol 92.29 92.04
Solyc01g104770.2.1 Tomato nucleus 92.29 92.04
GSMUA_Achr9P08850_001 Banana cytosol 85.37 91.98
GSMUA_Achr6P34320_001 Banana cytosol 59.57 91.8
GSMUA_Achr8P02660_001 Banana cytosol 92.02 91.78
PGSC0003DMT400076499 Potato cytosol 47.07 91.71
GSMUA_Achr11P... Banana cytosol 85.11 91.69
GSMUA_Achr7P10410_001 Banana cytosol 91.76 91.51
GSMUA_Achr11P... Banana cytosol 90.43 90.19
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 90.43 90.19
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 90.43 90.19
AT1G49240.1 Thale cress cytosol 89.1 88.86
CDX82326 Canola cytosol 89.1 88.86
AT3G18780.3 Thale cress cytosol 88.83 88.59
CDY18545 Canola cytosol 88.83 88.59
CDY61982 Canola cytosol 88.83 88.59
CDX95498 Canola cytosol 88.83 88.59
CDX92272 Canola cytosol 88.83 88.59
Bra022356.1-P Field mustard cytosol 76.06 88.54
CDX99315 Canola cytosol 76.06 88.54
Solyc04g071260.2.1 Tomato plastid 88.3 88.06
CDX92271 Canola cytosol 73.67 87.38
HORVU1Hr1G002840.6 Barley plasma membrane 92.82 85.75
HORVU3Hr1G083380.1 Barley cytosol 88.56 85.38
HORVU4Hr1G008310.9 Barley cytosol 91.49 84.52
HORVU5Hr1G000180.1 Barley cytosol, nucleus 91.22 83.86
PGSC0003DMT400076501 Potato cytosol 44.41 83.5
GSMUA_Achr10P... Banana cytosol 60.37 82.55
Bra037560.1-P Field mustard cytoskeleton, cytosol 75.8 80.74
VIT_04s0044g00580.t01 Wine grape extracellular 92.82 75.87
PGSC0003DMT400087294 Potato mitochondrion 54.79 75.18
HORVU5Hr1G039850.3 Barley mitochondrion 90.16 72.9
PGSC0003DMT400022210 Potato cytosol 66.22 67.66
PGSC0003DMT400074882 Potato cytosol 65.69 66.76
PGSC0003DMT400022205 Potato cytosol 64.89 66.67
PGSC0003DMT400074887 Potato cytosol 62.5 63.51
PGSC0003DMT400088088 Potato cytosol 31.65 61.34
HORVU4Hr1G007240.3 Barley cytosol 42.82 34.33
HORVU6Hr1G032610.8 Barley cytosol 40.16 31.39
HORVU6Hr1G053910.4 Barley cytosol 36.7 31.22
HORVU5Hr1G088030.1 Barley plastid 41.22 30.51
HORVU7Hr1G074460.5 Barley cytosol 35.11 30.28
HORVU0Hr1G005770.1 Barley cytosol 33.24 29.07
HORVU5Hr1G102220.2 Barley plastid 32.18 27.63
Protein Annotations
EnsemblPlants:HORVU1Hr1G074350.1EnsemblPlantsGene:HORVU1Hr1G074350Gene3D:3.30.420.40Gene3D:3.90.640.10GO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005524InterPro:ActinInterPro:Actin/actin-like_CSInterPro:Actin_CSPANTHER:PTHR11937
PANTHER:PTHR11937:SF248PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132
SMART:SM00268SUPFAM:SSF53067UniParc:UPI00029644DDUniProt:M0X0A5MapMan:20.2.1:
Description
No Description!
Coordinates
chrchr1H:-:507686919..507690279
Molecular Weight (calculated)
41577.9 Da
IEP (calculated)
5.154
GRAVY (calculated)
-0.182
Length
376 amino acids
Sequence
(BLAST)
001: MADEDVQPIV CDNGTGMVKA GFAGDDAPRA VFPSIVGRPR HTGVMVGMGQ KDAYVGDEAQ AKRGILTLKY PIEHGIVNNW DDMEKIWHHT FYNELRVAPE
101: DHPVLLTEAP LNPKANREKM TQIMFETFSC PAMYVAIQAV LSLYASGRTT GIVLDSGDGV SHTVPIYEGY TLPHAILRLD LAGRDLTDNL MKILTERGYS
201: LTTTAEREIV RDIKEKLAYV ALDYEQELET ARSSSSVEKS YEMPDGQVIT IGSERFRCPE VLFQPSHVGM EVPGIHEATY NSIMKCDVDI RKDLYGNVVL
301: SGGSTMFPGI ADRMSKEITA LAPSSMKVKV IAPPERKYSV WIGGSILASL STFQQMWISK AEYDESGPGI VHMKCF
Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.