Factsheet for HORVU5Hr1G088030.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G358500.1	Wheat	cytosol	86.02	98.65
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	85.83	98.42
TraesCS5D01G364800.1	Wheat	cytosol	85.83	98.42
Os08t0137200-01	Rice	nucleus	79.72	91.42
HORVU6Hr1G032610.8	Barley	cytosol	86.02	90.85
EER93001	Sorghum	cytosol	78.94	90.52
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	78.94	90.52
PGSC0003DMT400056033	Potato	cytosol	63.39	74.02
Solyc12g037980.1.1	Tomato	nucleus	62.8	73.33
KRH66446	Soybean	nucleus	63.58	72.58
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	67.32	72.3
KRH48882	Soybean	nucleus	63.19	71.97
KRH41617	Soybean	nucleus	60.43	71.23
CDY26159	Canola	cytosol	59.65	68.55
CDY19213	Canola	cytosol	59.45	68.33
CDX96721	Canola	cytosol	58.86	68.26
CDX83847	Canola	cytosol	58.66	67.88
AT1G18450.1	Thale cress	cytosol	58.86	67.8
VIT_17s0000g04010.t01	Wine grape	mitochondrion	50.39	57.92
HORVU5Hr1G117900.1	Barley	cytosol	31.3	42.18
HORVU1Hr1G047440.2	Barley	cytosol	31.3	42.18
HORVU1Hr1G074350.1	Barley	cytosol	30.51	41.22
HORVU1Hr1G002840.6	Barley	plasma membrane	31.3	39.07
HORVU3Hr1G083380.1	Barley	cytosol	29.92	38.97
HORVU5Hr1G000180.1	Barley	cytosol, nucleus	30.71	38.14
HORVU4Hr1G008310.9	Barley	cytosol	30.32	37.84
HORVU5Hr1G039850.3	Barley	mitochondrion	30.71	33.55
HORVU4Hr1G007240.3	Barley	cytosol	24.21	26.23
HORVU7Hr1G074460.5	Barley	cytosol	21.26	24.77
HORVU6Hr1G053910.4	Barley	cytosol	21.46	24.66
HORVU0Hr1G005770.1	Barley	cytosol	20.47	24.19
HORVU5Hr1G102220.2	Barley	plastid	19.68	22.83

Protein Annotations

EnsemblPlants:HORVU5Hr1G088030.1	EnsemblPlantsGene:HORVU5Hr1G088030	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	PANTHER:PTHR11937
PANTHER:PTHR11937:SF274	PFAM:PF00022	SEG:seg	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000B486608
UniProt:A0A287S5U0	MapMan:12.4.6.1	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:580484846..580493591

Molecular Weight (calculated)

55870.2 Da

IEP (calculated)

6.211

GRAVY (calculated)

-0.361

Length

508 amino acids

Sequence
(BLAST)

001: QRQTRSSFFS SPLPRPLPSP RSVPYLSVAA DASAPQTRHA IRIRPCAPRR AAPQLADSSL SGSPAMYGGD EVSAIVIDVG SYSCKAGYAG DDTPKSVFPS
101: VVGSIEQAED TDEAKPEKEA DSASDPKNGS KPMDVDKAKT KRKFYVGQEL EFRRDHMEVI SPMKDGTVTD WDVVDNIWNH AFRRRLLINP EEHPMLIAEP
201: SINSAQQREK AAELMFEKYK VPALFLAKNA VLTSFASGRA TSLVVDSGGG STVVSAVHDG YVLQKSVATS PIGGEFLTDC MMKSLESKGV VIRPRYSFKK
301: KEASPGDYKV VDLDFPNTTE SYRLYHMRAI ASDIKETVCR VPDTPFDEVA YANVPTTSYE LPDGQTIEVG AERFKIPDIL FNPYLSQTIP GIDGFGDSTS
401: IRGLPRMVLD SVNRCDVDIR KELLSSILLS GGSSSILQLK DRLEKEVLEE CPQNARVKVL ASGNSIERRF SVWIGGSILA SLGSFQQMWF SKAEYEEHGV
501: SYIQRKCP

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.