Factsheet for HORVU6Hr1G053910.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G062760.2
HORVU3Hr1G029210.3
HORVU4Hr1G007240.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	HORVU3Hr1G029210.3	AT1G29170.1	17267444
AT1G13180.1	HORVU2Hr1G062760.2	AT2G22640.1	17267444
AT1G13180.1	HORVU4Hr1G007240.3	AT3G27000.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G194100.1	Wheat	cytosol	94.12	97.42
TraesCS6A01G211000.1	Wheat	cytosol	94.12	97.42
TraesCS6B01G240500.1	Wheat	cytosol	93.89	97.19
Os02t0596900-01	Rice	cytosol	86.88	89.72
KXG30555	Sorghum	cytosol	85.75	87.53
Zm00001d017106_P001	Maize	cytosol	85.52	87.3
GSMUA_Achr6P21120_001	Banana	cytosol	80.54	83.37
VIT_01s0137g00280.t01	Wine grape	cytosol	80.09	82.71
PGSC0003DMT400027956	Potato	cytosol	80.54	82.6
Solyc05g013940.2.1	Tomato	cytosol	80.09	82.52
Zm00001d050981_P001	Maize	cytosol	84.84	81.7
Solyc04g024530.2.1	Tomato	cytosol	78.28	80.65
KRH59228	Soybean	nucleus	77.6	80.14
AT1G13180.1	Thale cress	cytosol	76.24	78.92
CDX98005	Canola	cytosol	74.89	77.52
Bra019815.1-P	Field mustard	cytosol	74.89	77.52
Bra016738.1-P	Field mustard	cytosol	74.66	77.28
CDY19392	Canola	cytosol	74.66	77.28
CDY21087	Canola	cytosol	74.66	77.28
CDY34585	Canola	cytosol	74.21	76.81
KRH59222	Soybean	cytosol	31.45	72.4
HORVU7Hr1G074460.5	Barley	cytosol	65.38	66.28
HORVU1Hr1G047440.2	Barley	cytosol	32.13	37.67
HORVU5Hr1G117900.1	Barley	cytosol	31.67	37.14
HORVU1Hr1G074350.1	Barley	cytosol	31.22	36.7
HORVU3Hr1G083380.1	Barley	cytosol	31.0	35.13
HORVU4Hr1G008310.9	Barley	cytosol	31.9	34.64
HORVU5Hr1G000180.1	Barley	cytosol, nucleus	31.9	34.47
HORVU1Hr1G002840.6	Barley	plasma membrane	31.67	34.4
HORVU5Hr1G039850.3	Barley	mitochondrion	31.45	29.89
HORVU4Hr1G007240.3	Barley	cytosol	27.6	26.01
HORVU0Hr1G005770.1	Barley	cytosol	24.21	24.88
HORVU6Hr1G032610.8	Barley	cytosol	24.43	22.45
HORVU5Hr1G088030.1	Barley	plastid	24.66	21.46
HORVU5Hr1G102220.2	Barley	plastid	20.36	20.55

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	UniProt:A0A287U7I8	InterPro:Actin	InterPro:Arp3
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0034314	EnsemblPlantsGene:HORVU6Hr1G053910	EnsemblPlants:HORVU6Hr1G053910.4	PFAM:PF00022	PANTHER:PTHR11937
PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000B46B9E7	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:339076163..339088292

Molecular Weight (calculated)

49533.7 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.362

Length

442 amino acids

Sequence
(BLAST)

001: MAPGTHLCPS RLPDLRVGRT RDADPSNRGS YTKMGFAGNV EPCFITPTAV AVNESFSDQT RATAKGNWLA QHSAGVMADL DFLIGEEALA RSRSSSTYSL
101: SYPIRNGQQV DNWDTMEKFW QQCIFNYLRC DPEDHYFLLT ESPLTPPETR EYTGEIMFET FNVPGLYIAV QPVLALAAGY TTTKCEMTGV VVDVGDGATH
201: IVPVADGYVI GNSISSIPLT GKDVTQFIQQ LMKERGEHIP PEESFDVARR AKEMYCYTCS DIVKEFNKHD REPSKYIKRL TGIKPKTGAP YTCDIGYERF
301: LGPEIFFHPE IYNNDFTTPL QDVIDKCIQS SPIDTRRALY KNIVLSGGST MFKDFHRRLQ RDLKKIVDVR VRASNARLGG DAKAQPVEVN VVSHPIQRYA
401: VWFGGSVLAS TAEFYEACHT KAEYEEYGAS ICRSNPVFKG MY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.