Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G168100.1 | Wheat | cytosol | 90.57 | 91.28 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 89.1 | 89.87 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 88.64 | 89.4 |
| Os01t0208600-01 | Rice | cytosol | 64.61 | 62.67 |
| KXG31590 | Sorghum | cytosol | 59.66 | 56.27 |
| HORVU0Hr1G014100.2 | Barley | cytosol | 7.88 | 53.97 |
| Zm00001d008906_P003 | Maize | cytosol | 54.79 | 50.82 |
| HORVU2Hr1G126350.1 | Barley | cytosol | 2.01 | 38.81 |
| HORVU2Hr1G042610.1 | Barley | cytosol | 2.01 | 38.81 |
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 25.19 | 34.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.91 | 33.86 |
| GSMUA_Achr10P... | Banana | cytosol | 30.29 | 33.0 |
| AT2G34150.2 | Thale cress | nucleus | 20.71 | 32.64 |
| CDY17225 | Canola | nucleus | 19.94 | 31.81 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 26.2 | 31.1 |
| Bra010847.1-P | Field mustard | nucleus | 20.94 | 28.23 |
| CDX90172 | Canola | nucleus | 20.94 | 28.23 |
| Bra005450.1-P | Field mustard | nucleus | 19.32 | 28.15 |
| CDY43322 | Canola | nucleus | 20.63 | 28.02 |
| AT1G29170.1 | Thale cress | nucleus | 21.02 | 26.67 |
| CDY63143 | Canola | nucleus | 18.08 | 26.35 |
| KRH42863 | Soybean | nucleus | 26.51 | 25.69 |
| Solyc02g076840.2.1 | Tomato | nucleus | 24.65 | 24.52 |
| CDX78876 | Canola | nucleus | 13.06 | 23.28 |
| KRH58965 | Soybean | nucleus | 16.38 | 21.41 |
| HORVU2Hr1G014860.1 | Barley | cytosol | 6.11 | 20.15 |
| HORVU3Hr1G028090.1 | Barley | cytosol, nucleus | 4.48 | 19.08 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.01 | 18.31 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 16.15 | 15.83 |
| CDX78875 | Canola | extracellular, vacuole | 9.51 | 15.02 |
| CDX99451 | Canola | nucleus | 17.08 | 11.6 |
| AT4G18600.1 | Thale cress | nucleus | 17.23 | 11.0 |
| Bra013329.1-P | Field mustard | nucleus | 16.85 | 9.52 |
| HORVU0Hr1G014110.1 | Barley | cytosol, nucleus, plastid | 9.66 | 6.07 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | EnsemblPlantsGene:HORVU3Hr1G029210 | EnsemblPlants:HORVU3Hr1G029210.3 | InterPro:IPR003124 |
| UniProt:M0XEC2 | PFscan:PS51082 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 | InterPro:SCAR/WAVE_fam | UniParc:UPI000295E6D9 |
| InterPro:WH2_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:133980151..133988733
Molecular Weight (calculated)
141490.0 Da
IEP (calculated)
4.744
GRAVY (calculated)
-0.726
Length
1294 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRFEVRN EVGLGDPGLY GAAGAGKRGG AGAAAAGEAE PKALLEGVAV AGLVGILRQL GDLAEFAADI FHDLHEQVIT TSSRGRKVLT RVQNIEAALP
0101: SLEKAVKNQK SHIHFAYVPG SDWHTQLQNE QNHLLSSDLP RFMMDSYEEC RDPPRLYLLD KFDNAGAGAC LKRYSDPSYF KKSWDVMRAD KTAHLQKERR
0201: SHKIKRKGSR LKEPYHGQAT SRHRNGELQR ALTAVQLTSS RQCASPSMDG QSFSEHRSTS DARSNPDNIS RSSSFSSKAR LSFAEQASDT KPSVIPHENG
0301: HAKLSNIDMH KLNDASSPVL LSETREDDLG DDLKQGSLSD EMNARSPSVE WHEKAAIVMT TSSVYCDDVV MDRAENAETK HIKPVQREVD YREMQTLEQQ
0401: GALLQKAKLL LLSSGLNHRD EVPCETDNYM DALNTLESET ETEVDSQTKK QGKPVHSFNA HAPQIELTDN AVSQLPDSSP VEFPDTSPNS RMLHTFERSA
0501: DFPSLSSADA PDISQHSLSG YTDIHPNEWS SVTTIPENNA NNAAGDPTEI SEPALQAYTP TPPNQRCPRA NEIPESKAEV IPRDSPVISK PELSTYAVFP
0601: PNKESIVSQI PENSVEGVSE DDTNEITSCL VPEPSISFAP TSEASPAKIL PGYNTGNSVI SERSPQDYPG ENHQEFGGCG MAEVSNSQTM PLNESSENGS
0701: ATQHLPTHAP TSSQHLPTHA PTSSVELSSV KLWTNAGLFG LEPSKPPVGI CPGSANQSYP ENNQSATRTP DAVYSQTNRP SDSSTYFEHR EHSNLNGKQA
0801: SISELLESEG NAEIGAETYS GTDLVGRNNL PVVSASSFSS IAQRFLANTL QRRTSPKYND LPMSSGRVNT DTNGFDEATV NSTLAPKETV FEASQFEKKT
0901: DYGVDGLPKS SSCHYSEKSS PPLEHMKISF HPMSASEMSK LNLDFSDGNL HENVDDMMLP TFQLLPGSSV PQPGSGSESE DDTFGRSYSY SSYDDLSPRL
1001: YSNSELWDQE DGIGFEDNEL YNDSNQIGSS TTPVSSYMGF EQMNLSGEKS TISLSDIGDN NGLGSLESHP AGELPNFDTL MSTSNHQNRD ALIPQNPINL
1101: SPVVDQMPPP PPLPPMQWRT MRQTTSLEEE RDSTAKDMLE NASSLPPVHT PVQEQHLPPC APPFPQGNVK EVNHQKVDVI KETSNLPNIF EIKSSLLQQI
1201: RDKPDLHKLN GHEKSKAVFS DVNSLDERGE LLQQIRSKTF NLRRTNGSKT NTSSQSTEST ANSSVVAILE KANAIRQAVA SDEGGDDDNW SDIN
0101: SLEKAVKNQK SHIHFAYVPG SDWHTQLQNE QNHLLSSDLP RFMMDSYEEC RDPPRLYLLD KFDNAGAGAC LKRYSDPSYF KKSWDVMRAD KTAHLQKERR
0201: SHKIKRKGSR LKEPYHGQAT SRHRNGELQR ALTAVQLTSS RQCASPSMDG QSFSEHRSTS DARSNPDNIS RSSSFSSKAR LSFAEQASDT KPSVIPHENG
0301: HAKLSNIDMH KLNDASSPVL LSETREDDLG DDLKQGSLSD EMNARSPSVE WHEKAAIVMT TSSVYCDDVV MDRAENAETK HIKPVQREVD YREMQTLEQQ
0401: GALLQKAKLL LLSSGLNHRD EVPCETDNYM DALNTLESET ETEVDSQTKK QGKPVHSFNA HAPQIELTDN AVSQLPDSSP VEFPDTSPNS RMLHTFERSA
0501: DFPSLSSADA PDISQHSLSG YTDIHPNEWS SVTTIPENNA NNAAGDPTEI SEPALQAYTP TPPNQRCPRA NEIPESKAEV IPRDSPVISK PELSTYAVFP
0601: PNKESIVSQI PENSVEGVSE DDTNEITSCL VPEPSISFAP TSEASPAKIL PGYNTGNSVI SERSPQDYPG ENHQEFGGCG MAEVSNSQTM PLNESSENGS
0701: ATQHLPTHAP TSSQHLPTHA PTSSVELSSV KLWTNAGLFG LEPSKPPVGI CPGSANQSYP ENNQSATRTP DAVYSQTNRP SDSSTYFEHR EHSNLNGKQA
0801: SISELLESEG NAEIGAETYS GTDLVGRNNL PVVSASSFSS IAQRFLANTL QRRTSPKYND LPMSSGRVNT DTNGFDEATV NSTLAPKETV FEASQFEKKT
0901: DYGVDGLPKS SSCHYSEKSS PPLEHMKISF HPMSASEMSK LNLDFSDGNL HENVDDMMLP TFQLLPGSSV PQPGSGSESE DDTFGRSYSY SSYDDLSPRL
1001: YSNSELWDQE DGIGFEDNEL YNDSNQIGSS TTPVSSYMGF EQMNLSGEKS TISLSDIGDN NGLGSLESHP AGELPNFDTL MSTSNHQNRD ALIPQNPINL
1101: SPVVDQMPPP PPLPPMQWRT MRQTTSLEEE RDSTAKDMLE NASSLPPVHT PVQEQHLPPC APPFPQGNVK EVNHQKVDVI KETSNLPNIF EIKSSLLQQI
1201: RDKPDLHKLN GHEKSKAVFS DVNSLDERGE LLQQIRSKTF NLRRTNGSKT NTSSQSTEST ANSSVVAILE KANAIRQAVA SDEGGDDDNW SDIN
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Arabidopsis Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.