Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17225 | Canola | nucleus | 63.06 | 69.05 |
| AT2G34150.2 | Thale cress | nucleus | 44.26 | 47.87 |
| Zm00001d025836_P001 | Maize | cytosol | 4.62 | 32.8 |
| Zm00001d025835_P001 | Maize | cytosol | 4.62 | 32.8 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 5.07 | 31.25 |
| CDX90172 | Canola | nucleus | 31.98 | 29.58 |
| CDY43322 | Canola | nucleus | 30.52 | 28.44 |
| CDX78876 | Canola | nucleus | 18.58 | 22.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.23 | 19.6 |
| KRH42863 | Soybean | nucleus | 29.17 | 19.4 |
| Solyc02g076840.2.1 | Tomato | nucleus | 27.48 | 18.75 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 26.8 | 18.55 |
| GSMUA_Achr10P... | Banana | cytosol | 24.77 | 18.52 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 22.3 | 18.17 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 26.24 | 18.16 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 26.35 | 18.08 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 25.9 | 17.91 |
| Os01t0208600-01 | Rice | cytosol | 25.79 | 17.17 |
| KXG31590 | Sorghum | cytosol | 25.45 | 16.47 |
| Zm00001d008906_P003 | Maize | cytosol | 23.99 | 15.27 |
| CDY39815 | Canola | nucleus | 15.65 | 13.97 |
| CDY69042 | Canola | nucleus | 17.34 | 12.92 |
| CDX91460 | Canola | cytosol | 17.91 | 11.37 |
| CDX78875 | Canola | extracellular, vacuole | 10.25 | 11.11 |
| CDX99451 | Canola | nucleus | 20.27 | 9.44 |
Protein Annotations
| EnsemblPlants:CDY63143 | EnsemblPlantsGene:GSBRNA2T00037957001 | Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | GO:A0A078JB29 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030036 | InterPro:SCAR/WAVE_fam | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 | ProteinID:CDY63143 | ProteinID:CDY63143.1 |
| SEG:seg | UniParc:UPI0004EE0E01 | UniProt:A0A078JB29 | MapMan:20.2.2.2.4 | : | : |
Description
BnaCnng41450DBnaCnng41450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB29]
Coordinates
chrLK034250:+:23490..30788
Molecular Weight (calculated)
99501.3 Da
IEP (calculated)
4.461
GRAVY (calculated)
-0.792
Length
888 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVRVEVRN VYGLGKTELH RDVDREDPKA VLDGVAVSGL VGILRQLGDL TEFATEIFHG IQEEVVLTAS RSNKLKMRLK QIEDTVPSIQ KAVLAQTNHI
101: EFAYTGGLEW HPRIPNVQDY FVYDDLPQFI MVPYDDCRDP PRLHLLDKFD INGPGSCLKR YTDPTHFKRS SRASKLPVNK VCLEWHPRIP NVQDYFVYDD
201: LPQFIMVPYD DCRDPPRLHL LDKFDINGPG SCLKRYTDPT HFKRSSRASK LPVNKKKKSL PRSRDVSRVV SMANQSDRKM LTSLSFSGRT SSSKTASTVE
301: IESKSDWQDH RSCSFDSRSG GEKLKGVFTP SRFTPGPRTI ASVLSETESE DANDDSPSQD LTARGSSCVS WHEKAEIVEA DTLKLETDEA PEVMETNAEP
401: ESGLKEHREV ETVQDITPRG VEMDSEDETE SEEDDFVDAL YTIDSESDND QEVQKKISNE ITEEEFDNYV CEQDTENVSN SFGLEDEAMC AAASDLHLSS
501: PASKPDEMIH QDPWEALDIS NGTTHSYSNG FSNPLYDTNG VQEHQESEDE SSCDNGEGTK LWTNGNLLGL KPSKPEIVEE TIQETDAEAL QRQPLREAHK
601: ADFDWFTSSP QLDHMKISFT PSETLPSSEL KLKLPDEYTF TSFQLVPETG GGTSLPDSDS DKDTFCRSSS YVSDNSDIHS VSISEQQSEV ESGERNSQQE
701: LYDSFHRAPS LSAPSSQFET SNGYLAGKIS YLQNPADPLP PPLPPLQWMV SKVPSESFED NNKKSFKDTL TRALEQQRSS LSTVKKEESN NKEESNSVIG
801: YDTKPENNVR DYKQGHVNAK ETQAGDFLHQ IRTKQFTLRR VVTTKASSSE ATMSANFSVI LEKASSIRQA VASDDGDGES DSWSDSDM
101: EFAYTGGLEW HPRIPNVQDY FVYDDLPQFI MVPYDDCRDP PRLHLLDKFD INGPGSCLKR YTDPTHFKRS SRASKLPVNK VCLEWHPRIP NVQDYFVYDD
201: LPQFIMVPYD DCRDPPRLHL LDKFDINGPG SCLKRYTDPT HFKRSSRASK LPVNKKKKSL PRSRDVSRVV SMANQSDRKM LTSLSFSGRT SSSKTASTVE
301: IESKSDWQDH RSCSFDSRSG GEKLKGVFTP SRFTPGPRTI ASVLSETESE DANDDSPSQD LTARGSSCVS WHEKAEIVEA DTLKLETDEA PEVMETNAEP
401: ESGLKEHREV ETVQDITPRG VEMDSEDETE SEEDDFVDAL YTIDSESDND QEVQKKISNE ITEEEFDNYV CEQDTENVSN SFGLEDEAMC AAASDLHLSS
501: PASKPDEMIH QDPWEALDIS NGTTHSYSNG FSNPLYDTNG VQEHQESEDE SSCDNGEGTK LWTNGNLLGL KPSKPEIVEE TIQETDAEAL QRQPLREAHK
601: ADFDWFTSSP QLDHMKISFT PSETLPSSEL KLKLPDEYTF TSFQLVPETG GGTSLPDSDS DKDTFCRSSS YVSDNSDIHS VSISEQQSEV ESGERNSQQE
701: LYDSFHRAPS LSAPSSQFET SNGYLAGKIS YLQNPADPLP PPLPPLQWMV SKVPSESFED NNKKSFKDTL TRALEQQRSS LSTVKKEESN NKEESNSVIG
801: YDTKPENNVR DYKQGHVNAK ETQAGDFLHQ IRTKQFTLRR VVTTKASSSE ATMSANFSVI LEKASSIRQA VASDDGDGES DSWSDSDM
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Arabidopsis Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.