Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58965 | Soybean | nucleus | 39.93 | 53.84 |
| AT2G34150.2 | Thale cress | nucleus | 23.6 | 38.37 |
| Zm00001d032131_P001 | Maize | cytosol, extracellular, plastid | 3.9 | 36.11 |
| Zm00001d025836_P001 | Maize | cytosol | 3.37 | 36.0 |
| Zm00001d025835_P001 | Maize | cytosol | 3.37 | 36.0 |
| CDY17225 | Canola | nucleus | 20.97 | 34.53 |
| AT1G29170.1 | Thale cress | nucleus | 24.94 | 32.65 |
| CDX90172 | Canola | nucleus | 23.22 | 32.29 |
| Bra010847.1-P | Field mustard | nucleus | 23.22 | 32.29 |
| CDY43322 | Canola | nucleus | 22.7 | 31.79 |
| Bra005450.1-P | Field mustard | nucleus | 21.05 | 31.64 |
| Solyc02g076840.2.1 | Tomato | nucleus | 29.14 | 29.9 |
| CDY63143 | Canola | nucleus | 19.4 | 29.17 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.27 | 28.35 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 25.69 | 26.73 |
| TraesCS3B01G168100.1 | Wheat | cytosol | 25.62 | 26.64 |
| TraesCS3D01G150600.1 | Wheat | cytosol | 25.54 | 26.58 |
| GSMUA_Achr10P... | Banana | cytosol | 23.6 | 26.52 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 25.69 | 26.51 |
| Os01t0208600-01 | Rice | cytosol | 25.24 | 25.26 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 20.07 | 24.59 |
| KXG31590 | Sorghum | cytosol | 24.49 | 23.83 |
| Zm00001d008906_P003 | Maize | cytosol | 23.67 | 22.65 |
| KRH00374 | Soybean | cytosol | 15.66 | 15.74 |
| KRH40820 | Soybean | cytosol | 15.21 | 14.93 |
| KRH76068 | Soybean | cytosol | 17.15 | 13.52 |
| KRH65511 | Soybean | cytosol | 16.4 | 12.97 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | EntrezGene:100785016 | MapMan:20.2.2.2.4 | EMBL:ACUP02004833 | EnsemblPlantsGene:GLYMA_08G116000 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030036 | UniProt:K7L640 | EnsemblPlants:KRH42863 | ProteinID:KRH42863 | ProteinID:KRH42863.1 |
| PANTHER:PTHR12902 | PANTHER:PTHR12902:SF1 | InterPro:SCAR/WAVE_fam | UniParc:UPI00029691D2 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:-:8890367..8898954
Molecular Weight (calculated)
147837.0 Da
IEP (calculated)
4.768
GRAVY (calculated)
-0.819
Length
1335 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRLQVRN EFGLGQPELY RKTNREDPKA VLDGVAVAGL VGILRQLGDL ADFAAEVFHG LQEQVMTTAS RSHRLTFRVQ NIEASLPALE KAVLAQTSHI
0101: HLAYTAGCEW HPRMKAAQNH FIYNDLPHFI MDSYEECCDP PRVHLLDKFD TGGPGSCFRR YSDPTFFQRV STDSDKSYSG KTEKARESHK SKKKRSRRNG
0201: DILRGEQSHG TSGRMKSISS AINGRTSSSQ TTSTIDMTMK SDLEHYSNSF DSKSGAGYIE CVFHPSNSKQ SDEPDYKAPS STKLKRKNDT LSSVSHHIDD
0301: SISHDTLEKQ VASSSSGVTW DEKEEIVESK SQACDIDKTP ERLVENHDLD MHVNEAVTIT SIDYNHILFN EESNLKPVSN RVQTDDIDSE PDNYVDALNT
0401: IESESENDID YITKREVQQL SSRVTRGTIE NGVTEAPPNL LDNNLSDVVS QTDYTVPLNE EKGNLADSLQ ENRVLDLVSK PNASNLGYVS PSDDLDRENM
0501: TRDTASLNKE PFRDLSDSLQ DIPPLTSEPH ASNLGPENPS DVPYSEEMTR DTVCFNKEMF GNLPDLLQEI SPLTSEPHAS NLGPGHPSDV PYGEEMTRDT
0601: VCFNKETFRY LPDSMQEIPP LTIEPRTSNL GPVNPSNAPY SQETTTDTIS LNKEMFGNLP NSLQETPALT LEPHASNLAS VSPSDISVSK GIAKNIADSH
0701: HPKTPACEQV PCTIENSVLD NSVCTDTYIG SSTVNDTVSA PIETDISFSG SNNSNLPDEE AGKINNNICK SEETRRESLA DHSVRFWTNG GLLGLEPSKP
0801: PDFNKSTSLS QGSLSTKSET DGGSHHNSMQ KSNGYKEERE SSEDVAEQIL KEPSSRFLTS GHNDDQACIS EKATGNSQQS NGFCQIERNS LGEIRVAAPE
0901: SVLPSILDTK DITEPNQGNG ENSSRVFGLS RRLLINSFQR KVSFDEKLER YNSLKSVILD QSGQNGIVGQ SLPETTTSKE KVGSGYPIKS LPPSPPLEHM
1001: KISFHPVSGL EISKLKLKFP DGSNRHESLK DVFPSFQLVP EASLPLDGLV SHSDDDDTFC RSSPYISDDG RSPRSDYNSE QWESDETPEN SDQGVHDSPR
1101: RRSSAESVSI DDTNVRSGQG TCTTNGVEHS LSRPLLDFPS YDNVNPALEK ESKRHSKCNN VMSHSHAEPT QPPPPPPPLP PTQWRVSKPQ LDMTNGTHHL
1201: SEDAEHIDDH GIPHSTIFQQ PRLTQVEQLQ INHDDHESYN NIIYRLKDKL DPQKLKGQKE ANQLKMGKET DEREDFLYQI RTKAFNLRPT VTGKSNDTTG
1301: PTANVKVTAI LEKANAIRQV VASDDGEDDD NWSDT
0101: HLAYTAGCEW HPRMKAAQNH FIYNDLPHFI MDSYEECCDP PRVHLLDKFD TGGPGSCFRR YSDPTFFQRV STDSDKSYSG KTEKARESHK SKKKRSRRNG
0201: DILRGEQSHG TSGRMKSISS AINGRTSSSQ TTSTIDMTMK SDLEHYSNSF DSKSGAGYIE CVFHPSNSKQ SDEPDYKAPS STKLKRKNDT LSSVSHHIDD
0301: SISHDTLEKQ VASSSSGVTW DEKEEIVESK SQACDIDKTP ERLVENHDLD MHVNEAVTIT SIDYNHILFN EESNLKPVSN RVQTDDIDSE PDNYVDALNT
0401: IESESENDID YITKREVQQL SSRVTRGTIE NGVTEAPPNL LDNNLSDVVS QTDYTVPLNE EKGNLADSLQ ENRVLDLVSK PNASNLGYVS PSDDLDRENM
0501: TRDTASLNKE PFRDLSDSLQ DIPPLTSEPH ASNLGPENPS DVPYSEEMTR DTVCFNKEMF GNLPDLLQEI SPLTSEPHAS NLGPGHPSDV PYGEEMTRDT
0601: VCFNKETFRY LPDSMQEIPP LTIEPRTSNL GPVNPSNAPY SQETTTDTIS LNKEMFGNLP NSLQETPALT LEPHASNLAS VSPSDISVSK GIAKNIADSH
0701: HPKTPACEQV PCTIENSVLD NSVCTDTYIG SSTVNDTVSA PIETDISFSG SNNSNLPDEE AGKINNNICK SEETRRESLA DHSVRFWTNG GLLGLEPSKP
0801: PDFNKSTSLS QGSLSTKSET DGGSHHNSMQ KSNGYKEERE SSEDVAEQIL KEPSSRFLTS GHNDDQACIS EKATGNSQQS NGFCQIERNS LGEIRVAAPE
0901: SVLPSILDTK DITEPNQGNG ENSSRVFGLS RRLLINSFQR KVSFDEKLER YNSLKSVILD QSGQNGIVGQ SLPETTTSKE KVGSGYPIKS LPPSPPLEHM
1001: KISFHPVSGL EISKLKLKFP DGSNRHESLK DVFPSFQLVP EASLPLDGLV SHSDDDDTFC RSSPYISDDG RSPRSDYNSE QWESDETPEN SDQGVHDSPR
1101: RRSSAESVSI DDTNVRSGQG TCTTNGVEHS LSRPLLDFPS YDNVNPALEK ESKRHSKCNN VMSHSHAEPT QPPPPPPPLP PTQWRVSKPQ LDMTNGTHHL
1201: SEDAEHIDDH GIPHSTIFQQ PRLTQVEQLQ INHDDHESYN NIIYRLKDKL DPQKLKGQKE ANQLKMGKET DEREDFLYQI RTKAFNLRPT VTGKSNDTTG
1301: PTANVKVTAI LEKANAIRQV VASDDGEDDD NWSDT
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Arabidopsis Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.