CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 1
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42863

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	KRH42863	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07553	Soybean	cytosol	59.38	48.36
VIT_01s0011g05400.t01	Wine grape	mitochondrion	62.5	42.68
CDX77566	Canola	mitochondrion	54.91	42.27
PGSC0003DMT400067754	Potato	mitochondrion	60.27	41.16
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	59.82	40.85
AT1G30825.1	Thale cress	mitochondrion	55.8	39.31
GSMUA_Achr5P09480_001	Banana	mitochondrion	56.7	39.08
Bra014893.1-P	Field mustard	mitochondrion	55.36	38.99
OQU88580	Sorghum	plasma membrane	39.29	38.1
CDX98226	Canola	cytosol, mitochondrion	54.02	38.05
Bra023140.1-P	Field mustard	mitochondrion	54.02	37.81
KXG38865	Sorghum	peroxisome	54.46	37.77
CDY58050	Canola	mitochondrion	54.02	37.69
CDY02334	Canola	mitochondrion	54.02	37.69
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	52.23	36.22
TraesCS3D01G237300.1	Wheat	cytosol	51.79	35.91
TraesCS3B01G262900.2	Wheat	cytosol	51.79	35.91
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	54.02	34.77
HORVU3Hr1G059010.8	Barley	mitochondrion	51.79	33.14
KRG90360	Soybean	cytosol	24.11	22.69
KRH33620	Soybean	cytosol	29.46	16.88
Os01t0654300-01	Rice	cytosol	2.23	7.81

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	UniProt:A0A0R0ISN1	EMBL:ACUP02005164	InterPro:ARPC2	InterPro:ARPC2/4
EnsemblPlantsGene:GLYMA_08G264400	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0008150
GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041	GO:GO:0030833	GO:GO:0034314
InterPro:IPR034666	EnsemblPlants:KRH45310	ProteinID:KRH45310	ProteinID:KRH45310.1	PFAM:PF04045	PANTHER:PTHR12058
PANTHER:PTHR12058:SF1	SUPFAM:SSF69645	UniParc:UPI0006EDAECB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:29869403..29878501

Molecular Weight (calculated)

25274.7 Da

IEP (calculated)

7.806

GRAVY (calculated)

-0.008

Length

224 amino acids

Sequence
(BLAST)

001: MILLQSHSRF LLQTLLNRAQ NLEKGVELDH HWVEFDDVRY HIQVSMKNPH VLLLSVSLPT PSSETIFVCG LPFGAIEAIK AAYGNLVQIL DPPRDGFNLT
101: LKINLSKLPA NQEQKHAFLV KVASIREVVL GAPLRVILEH LAARTVALDM DPLVALVHRP NESFFLFPQR HFRTMTPSLD SSSTNLDGSG HQHLTSHTPF
201: LLHTKQPQCE PFVGVDNVFF CRRH

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.