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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 4
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010847.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30825.1 Bra010847.1-P AT1G29170.1 17267444
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY02334 Canola mitochondrion 99.69 99.38
CDY58050 Canola mitochondrion 99.06 98.75
Bra014893.1-P Field mustard mitochondrion 96.25 96.86
AT1G30825.1 Thale cress mitochondrion 93.75 94.34
VIT_01s0011g05400.t01 Wine grape mitochondrion 70.0 68.29
KRH07553 Soybean cytosol 58.12 67.64
PGSC0003DMT400067754 Potato mitochondrion 69.06 67.38
Os01t0654300-01 Rice cytosol 13.44 67.19
Solyc11g068610.1.1 Tomato cytosol, mitochondrion 68.75 67.07
OQU88580 Sorghum plasma membrane 47.5 65.8
GSMUA_Achr5P09480_001 Banana mitochondrion 65.31 64.31
KXG38865 Sorghum peroxisome 64.38 63.78
TraesCS3A01G236900.1 Wheat cytosol, mitochondrion 63.12 62.54
TraesCS3B01G262900.2 Wheat cytosol 62.81 62.23
TraesCS3D01G237300.1 Wheat cytosol 62.19 61.61
Zm00001d007806_P003 Maize mitochondrion, peroxisome 64.06 58.91
HORVU3Hr1G059010.8 Barley mitochondrion 63.12 57.71
KRH45310 Soybean mitochondrion 37.81 54.02
Bra005500.1-P Field mustard cytosol, nucleus, peroxisome 28.12 28.21
Protein Annotations
MapMan:20.2.2.1.4Gene3D:3.30.1460.20InterPro:ARPC2InterPro:ARPC2/4EnsemblPlantsGene:Bra023140EnsemblPlants:Bra023140.1
EnsemblPlants:Bra023140.1-PGO:GO:0003674GO:GO:0003779GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856GO:GO:0005885GO:GO:0008150
GO:GO:0009987GO:GO:0015629GO:GO:0016043GO:GO:0030041GO:GO:0030833GO:GO:0034314
InterPro:IPR034666UniProt:M4E2Y9PFAM:PF04045PANTHER:PTHR12058SUPFAM:SSF69645UniParc:UPI0002542476
SEG:seg:::::
Description
AT1G30825 (E=5e-148) ARPC2A, DIS2 | DIS2 (DISTORTED TRICHOMES 2); structural molecule
Coordinates
chrA09:-:21391660..21393612
Molecular Weight (calculated)
36056.6 Da
IEP (calculated)
9.918
GRAVY (calculated)
-0.194
Length
320 amino acids
Sequence
(BLAST)
001: MLQSHSRFLL QTLLTRAQNL DKAVELDYQW IEFDDVRYHV QVTIKNPNIL LLSVSLPNPP PEAMSFDGLP LGAIEAIKTT YGTGFQILDP PRDGFSLTLK
101: LNFSKVRPDE AFRNSLLTKL ASIREVVMGA PLKIILKHLA SRTVAPELDR LVAIMHRPNE TFFLVPQADK VTVAFPMRFK DSVDTILATS FLKQFVEARR
201: AASLSSAPSC SWSPTAPQEL EGAPKETLSA NAGFVTFVIM PRHVEGEKLD RTVWNLSTFH AYVSYHVKCS EGFMHTRMRR RVESMIQALD QAKPLEKTRS
301: MNNKSFKRLG LNDANHTTSN
Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)
001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK
Arabidopsis Description
ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.