Factsheet for VIT_01s0011g05400.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
plastid 1
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0058g00770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	VIT_08s0058g00770.t01	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07553	Soybean	cytosol	66.46	79.27
Os01t0654300-01	Rice	cytosol	15.24	78.12
PGSC0003DMT400067754	Potato	mitochondrion	77.74	77.74
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	77.44	77.44
GSMUA_Achr5P09480_001	Banana	mitochondrion	75.91	76.62
AT1G30825.1	Thale cress	mitochondrion	70.12	72.33
KXG38865	Sorghum	peroxisome	70.12	71.21
Bra014893.1-P	Field mustard	mitochondrion	68.6	70.75
TraesCS3B01G262900.2	Wheat	cytosol	69.51	70.59
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	69.21	70.28
CDY02334	Canola	mitochondrion	68.6	70.09
Bra023140.1-P	Field mustard	mitochondrion	68.29	70.0
CDX98226	Canola	cytosol, mitochondrion	67.68	69.81
CDY58050	Canola	mitochondrion	68.29	69.78
TraesCS3D01G237300.1	Wheat	cytosol	68.6	69.66
CDX77566	Canola	mitochondrion	60.67	68.38
OQU88580	Sorghum	plasma membrane	47.87	67.97
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	70.43	66.38
HORVU3Hr1G059010.8	Barley	mitochondrion	68.9	64.57
KRH45310	Soybean	mitochondrion	42.68	62.5
VIT_05s0049g01740.t01	Wine grape	cytosol	38.11	34.53

Protein Annotations

EntrezGene:100261170	wikigene:100261170	MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	InterPro:ARPC2	InterPro:ARPC2/4
ProteinID:CBI26861	ProteinID:CBI26861.3	UniProt:D7T8P0	EMBL:FN595752	GO:GO:0003674	GO:GO:0003779
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030041	GO:GO:0030833	GO:GO:0034314	GO:GO:0051015
InterPro:IPR034666	EntrezGene:LOC100261170	wikigene:LOC100261170	PFAM:PF04045	PANTHER:PTHR12058	SUPFAM:SSF69645
TIGR:TC68086	UniParc:UPI00015C8831	ArrayExpress:VIT_01s0011g05400	EnsemblPlantsGene:VIT_01s0011g05400	EnsemblPlants:VIT_01s0011g05400.t01	unigene:Vvi.16332
RefSeq:XP_002284770	RefSeq:XP_002284770.1	RefSeq:XP_019074971.1	:	:	:

Description

Arp2/3 complex 34 kDa subunit [Source:UniProtKB/TrEMBL;Acc:D7T8P0]

Coordinates

chr1:+:5030553..5057042

Molecular Weight (calculated)

37040.1 Da

IEP (calculated)

10.343

GRAVY (calculated)

-0.123

Length

328 amino acids

Sequence
(BLAST)

001: MILLQSPSRF LLQTLLNRVQ NLEKGVELDY QWVEFDDVRY HVQVSMKYPQ FLLLSVSLPT PAQEAVFSGG LPFGAIEAIK ASYGVLVQIL DPPKDGFNLT
101: LKLNLSKLPP DEEYKHALLV KIASVREVVL GAPLRVVLKH LASRTVAPDI NRPFALVHRP KESFFLVPQA EKVTVVFPMR FKDSIDTVLA TSFLQEFVEA
201: RRTAGLNNAP PCLWSPSPPL ELRGTAGEAL SANAGFVTFV IFPRHVEGKK LDRTVWSLST FRAYVSYHVK CSEGFMHTRM RRRVESLIQA LDRAKPDLEK
301: SKKTVQGRSF KRLSLKEAHT NSNSQRWS

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.