Factsheet for VIT_05s0049g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044286	Potato	cytosol	66.57	64.27
Solyc09g090550.2.1	Tomato	cytosol	66.02	63.9
KRG90360	Soybean	cytosol	40.61	61.76
KRH33620	Soybean	cytosol	66.3	61.38
AT2G33385.2	Thale cress	cytosol	55.25	53.48
CDY17169	Canola	cytosol	54.7	52.38
Bra005500.1-P	Field mustard	cytosol, nucleus, peroxisome	43.92	49.84
CDY23743	Canola	cytosol	21.55	49.68
GSMUA_Achr1P00910_001	Banana	cytosol	46.13	48.41
TraesCS2B01G402000.2	Wheat	cytosol, mitochondrion	46.13	46.39
TraesCS2A01G385000.1	Wheat	cytosol, mitochondrion	45.86	46.11
TraesCS2D01G381700.2	Wheat	cytosol, mitochondrion	45.86	46.11
Os04t0512300-01	Rice	cytosol	46.13	45.38
EES12487	Sorghum	nucleus	44.48	41.28
VIT_01s0011g05400.t01	Wine grape	mitochondrion	34.53	38.11
CDY37726	Canola	cytosol	17.13	36.05
Zm00001d003039_P001	Maize	nucleus	36.74	32.36

Protein Annotations

EntrezGene:100258050	wikigene:100258050	MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	EMBL:AM476678	InterPro:ARPC2
InterPro:ARPC2/4	ProteinID:CAN66172	ProteinID:CAN66172.1	ProteinID:CBI23704	ProteinID:CBI23704.3	ncoils:Coil
UniProt:D7SZM6	EMBL:FN595496	GO:GO:0003674	GO:GO:0003779	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030041	GO:GO:0030833	GO:GO:0034314	GO:GO:0051015	InterPro:IPR034666	EntrezGene:LOC100258050
wikigene:LOC100258050	PFAM:PF04045	PANTHER:PTHR12058	PANTHER:PTHR12058:SF1	SUPFAM:SSF69645	UniParc:UPI00015C76CA
ArrayExpress:VIT_05s0049g01740	EnsemblPlantsGene:VIT_05s0049g01740	EnsemblPlants:VIT_05s0049g01740.t01	RefSeq:XP_002282041	RefSeq:XP_002282041.2	RefSeq:XP_010650140.1

Description

Arp2/3 complex 34 kDa subunit [Source:UniProtKB/TrEMBL;Acc:D7SZM6]

Coordinates

chr5:+:9179075..9185260

Molecular Weight (calculated)

41594.5 Da

IEP (calculated)

9.111

GRAVY (calculated)

-0.268

Length

362 amino acids

Sequence
(BLAST)

001: MACFERASPA LKEILLKLYR TEKPMEIDHH LYEFGSVEYH VQSSASDPHD TYLSIATPLL SQGVLPSHGL SHYTIEMIKG ICSDVLEIVE PAREGYQLTL
101: RLDLAKIPQG KDGAKVIAQI SSVQAVILSS QLKEMLQNVN SQDTSQGMYK PIKLVYHPRE PFFVIRQPQK ITAVFPMRFR ENSDVIIATA FFQELMDVGS
201: SEAWAKAPPC TWSPIPPPEL RGELFEDLST NGGFVSFDIF SHHVEGKQLD KTVWSLLNFY AYVKYHVKCT RGFIQRRMKN RLESLVEVLQ NASMEEEEHI
301: QKVEGCRCVR KLVSLSRSKV LNRRCHFTKK IRSPIKIHGF SRFRQQWLTM PKFSLIKYTK LD

Best Arabidopsis Sequence Match ( AT2G33385.2 )
(BLAST)

001: MAYLERASPT LKETLLKIYR AEKPIEVDQH FHEFGSIEYH IKYSVSDPNI VHVSTSTLLE TQGAVTLKEI SSYTYEVIKN IGVGVIDIVD PPRLGFQLTL
101: GLNLDNIPRG KEAIKIITRI SELQAIILSS QLKEMLRSLN FQDDSRSINN MPIRIVYHPS EPFYVFKQPE KITAVFPMNF KDNSDVVIAT SFFQELVEVG
201: SQKDMGKAPQ CSWSPIPPLQ LRGEPVQDLT TNSGFVSFDI TSRHIEGKRL DKTVWNLLNF YACAKYHIKC SRGYIQRRMR KRMETLVKLL NNTSLEEEAA
301: QNENGRCKYV KEFVKVPKGK LMMKQRCKEM TRRVKISKFR IKINGCARFR FNQRWISLPK FSSKPSDKSY TKLD

Arabidopsis Description

ARPC2BActin-related protein 2/3 complex subunit 2B [Source:UniProtKB/Swiss-Prot;Acc:F4IVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.