CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G385000.1	Wheat	cytosol, mitochondrion	68.72	74.44
TraesCS2D01G381700.2	Wheat	cytosol, mitochondrion	67.18	72.78
TraesCS2B01G402000.2	Wheat	cytosol, mitochondrion	67.18	72.78
Os04t0512300-01	Rice	cytosol	66.67	70.65
Zm00001d003039_P001	Maize	nucleus	72.31	68.61
VIT_05s0049g01740.t01	Wine grape	cytosol	41.28	44.48
GSMUA_Achr1P00910_001	Banana	cytosol	38.72	43.77
CDY23743	Canola	cytosol	16.67	41.4
Solyc09g090550.2.1	Tomato	cytosol	39.49	41.18
PGSC0003DMT400044286	Potato	cytosol	38.97	40.53
AT2G33385.2	Thale cress	cytosol	37.44	39.04
KRG90360	Soybean	cytosol	23.33	38.24
CDY17169	Canola	cytosol	36.41	37.57
KRH33620	Soybean	cytosol	36.92	36.83
Bra005500.1-P	Field mustard	cytosol, nucleus, peroxisome	30.0	36.68
KXG38865	Sorghum	peroxisome	26.92	32.51
CDY37726	Canola	cytosol	14.1	31.98
OQU88580	Sorghum	plasma membrane	17.95	30.3

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	InterPro:ARPC2	InterPro:ARPC2/4	UniProt:C5YC00	ncoils:Coil
EnsemblPlants:EES12487	ProteinID:EES12487	ProteinID:EES12487.2	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041
GO:GO:0030833	GO:GO:0034314	InterPro:IPR034666	PFAM:PF04045	PANTHER:PTHR12058	PANTHER:PTHR12058:SF1
EnsemblPlantsGene:SORBI_3006G144600	SUPFAM:SSF69645	UniParc:UPI0003C6C1CF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:50643007..50647935

Molecular Weight (calculated)

44313.7 Da

IEP (calculated)

11.525

GRAVY (calculated)

-0.452

Length

390 amino acids

Sequence
(BLAST)

001: MAFFSSGSRV LVEILTRMQS AERPMPVDHT FFEFGSIRYH VEASVSDPEN VFLSISTPSL SHEAAAPSSS SAASRLPELT LQETRKTYGR FAEIVEPPRE
101: GYALTLKLNF SGLARPKDRV KAINQVSLLQ SVVLSSQLKE MLGSLGSSPG TMRLVYNQRE PFFVSRTADE TINAIFPMRF RDDTDLAIAT SFFQELQDVG
201: NSFAWAPKCS WSPIPPPELR GEKVHHLTTN GGFVSFGVLS RHVRGKRAAK TAWILLNFQS YVKYHIKCTR SHVQSRMRER LETLTEAVQN ARLRGTNSHD
301: KKRASQVVKK RSSKRRLVSL AKASKKLHKG FRAVLDKIMK RLRQRIRVKG LDRLRRQFRC RCFAVPRLPA APPRAHSRSR KAHRYHKLAE

Best Arabidopsis Sequence Match ( AT2G33385.2 )
(BLAST)

001: MAYLERASPT LKETLLKIYR AEKPIEVDQH FHEFGSIEYH IKYSVSDPNI VHVSTSTLLE TQGAVTLKEI SSYTYEVIKN IGVGVIDIVD PPRLGFQLTL
101: GLNLDNIPRG KEAIKIITRI SELQAIILSS QLKEMLRSLN FQDDSRSINN MPIRIVYHPS EPFYVFKQPE KITAVFPMNF KDNSDVVIAT SFFQELVEVG
201: SQKDMGKAPQ CSWSPIPPLQ LRGEPVQDLT TNSGFVSFDI TSRHIEGKRL DKTVWNLLNF YACAKYHIKC SRGYIQRRMR KRMETLVKLL NNTSLEEEAA
301: QNENGRCKYV KEFVKVPKGK LMMKQRCKEM TRRVKISKFR IKINGCARFR FNQRWISLPK FSSKPSDKSY TKLD

Arabidopsis Description

ARPC2BActin-related protein 2/3 complex subunit 2B [Source:UniProtKB/Swiss-Prot;Acc:F4IVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.