CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23743	Canola	cytosol	46.51	50.96
CDY17169	Canola	cytosol	51.74	23.55
AT2G33385.2	Thale cress	cytosol	50.0	22.99
Solyc09g090550.2.1	Tomato	cytosol	38.37	17.65
PGSC0003DMT400044286	Potato	cytosol	37.79	17.33
VIT_05s0049g01740.t01	Wine grape	cytosol	36.05	17.13
TraesCS2A01G385000.1	Wheat	cytosol, mitochondrion	35.47	16.94
TraesCS2B01G402000.2	Wheat	cytosol, mitochondrion	35.47	16.94
TraesCS2D01G381700.2	Wheat	cytosol, mitochondrion	34.3	16.39
KRH33620	Soybean	cytosol	37.21	16.37
Os04t0512300-01	Rice	cytosol	33.14	15.49
GSMUA_Achr1P00910_001	Banana	cytosol	29.07	14.49
EES12487	Sorghum	nucleus	31.98	14.1
CDY58050	Canola	mitochondrion	26.16	14.02
CDY02334	Canola	mitochondrion	25.58	13.71
CDX98226	Canola	cytosol, mitochondrion	25.0	13.52
CDX77566	Canola	mitochondrion	20.93	12.37
KRG90360	Soybean	cytosol	15.7	11.34
Zm00001d003039_P001	Maize	nucleus	19.77	8.27

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	GO:A0A078HJ77	UniProt:A0A078HJ77	InterPro:ARPC2	InterPro:ARPC2/4
EnsemblPlants:CDY37726	ProteinID:CDY37726	ProteinID:CDY37726.1	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041
GO:GO:0030833	GO:GO:0034314	EnsemblPlantsGene:GSBRNA2T00064628001	InterPro:IPR034666	PFAM:PF04045	PANTHER:PTHR12058
PANTHER:PTHR12058:SF1	SUPFAM:SSF69645	UniParc:UPI0004EEA660	:	:	:

Description

BnaA04g19420DArp2/3 complex 34 kDa subunit [Source:UniProtKB/TrEMBL;Acc:A0A078HJ77]

Coordinates

chrLK032406:+:226809..227928

Molecular Weight (calculated)

20039.5 Da

IEP (calculated)

10.494

GRAVY (calculated)

-0.426

Length

172 amino acids

Sequence
(BLAST)

001: MGWVGYFLPM DKLLTKKTPQ CSWSPVPPFQ LRREPVQDLT TNSGFVSFDI TSRHVEGKRL DKTVWNLLNF YAYVEYHIKC SRGYIQRRMR KGMDSLVKLL
101: NNTSLEEVPQ KGIFFSSGFA SYIRFLTFCI NKMEDANTLI KKLVKVQKGK LMMKRQTDFS SNPSNKSYTK LP

Best Arabidopsis Sequence Match ( AT2G33385.1 )
(BLAST)

001: MAYLERASPT LKETLLKIYR AEKPIEVDQH FHEFGSIEYH IKYSVSDPNI VHVSTSTLLE TQGAVTLKEI SSYTYEVIKN IGVGVIDIVD PPRLGFQLTL
101: GLNLDNIPRG KEAIKIITRI SELQAIILSS QLKEMLRSLN FQDDSRSINN MPIRIVYHPS EPFYVFKQPE KITAVFPMNF KDNSDVVIAT SFFQDMGKAP
201: QCSWSPIPPL QLRGEPVQDL TTNSGFVSFD ITSRHIEGKR LDKTVWNLLN FYACAKYHIK CSRGYIQRRM RKRMETLVKL LNNTSLEEEA AQNENGRCKY
301: VKEFVKVPKG KLMMKQRCKE MTRRVKISKF RIKINGCARF RFNQRWISLP KFSSKPSDKS YTKLD

Arabidopsis Description

ARPC2BActin-related protein 2/3 complex subunit 2B [Source:UniProtKB/Swiss-Prot;Acc:F4IVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.