CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90172
CDY43322

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	CDX90172	AT1G29170.1	17267444
AT1G30825.1	CDY43322	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014893.1-P	Field mustard	mitochondrion	98.74	98.74
CDY02334	Canola	mitochondrion	96.23	95.33
CDY58050	Canola	mitochondrion	95.91	95.02
CDX77566	Canola	mitochondrion	84.91	92.78
AT1G30825.1	Thale cress	mitochondrion	91.51	91.51
KRH07553	Soybean	cytosol	59.12	68.36
VIT_01s0011g05400.t01	Wine grape	mitochondrion	69.81	67.68
Os01t0654300-01	Rice	cytosol	13.52	67.19
PGSC0003DMT400067754	Potato	mitochondrion	68.55	66.46
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	68.24	66.16
OQU88580	Sorghum	plasma membrane	47.48	65.37
GSMUA_Achr5P09480_001	Banana	mitochondrion	65.72	64.31
KXG38865	Sorghum	peroxisome	65.09	64.09
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	64.15	63.16
TraesCS3B01G262900.2	Wheat	cytosol	63.84	62.85
TraesCS3D01G237300.1	Wheat	cytosol	63.21	62.23
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	64.47	58.91
HORVU3Hr1G059010.8	Barley	mitochondrion	63.21	57.43
KRH45310	Soybean	mitochondrion	38.05	54.02
CDY23743	Canola	cytosol	17.92	36.31
CDY17169	Canola	cytosol	33.65	28.31
CDY37726	Canola	cytosol	13.52	25.0

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	GO:A0A078EAL7	InterPro:ARPC2	InterPro:ARPC2/4	EnsemblPlants:CDX98226
ProteinID:CDX98226	ProteinID:CDX98226.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041
GO:GO:0030833	GO:GO:0034314	EnsemblPlantsGene:GSBRNA2T00105723001	InterPro:IPR034666	PFAM:PF04045	PANTHER:PTHR12058
SUPFAM:SSF69645	UniParc:UPI0004EB7813	SEG:seg	:	:	:

Description

BnaC07g08720D

Coordinates

chrLK031903:+:1115602..1117765

Molecular Weight (calculated)

35932.7 Da

IEP (calculated)

9.990

GRAVY (calculated)

-0.184

Length

318 amino acids

Sequence
(BLAST)

001: MMLQPHSRFL LQTLLTRAHN LDKAVELDYQ WIEFDDVRYH VQVTMKNPSI LLLSVSLPNP PPEAMSFDGL PLGAIEAIKT AYGTGFQILD PPRDGFSLTL
101: KLNFSKLRPD EAYRNSLLTK LASIREVVMG APLKIILRHL ASRSVAPELD RLVAIMHRPN ETFFLVPQAD KVTVAFPMRF KDSVDTILAT SFLKQFVEAR
201: RAASLSSAPS CSWSPTAPQE LEGAPKETLS ANAGFVTFVI MPRHVEGEKL DRTVWNLSTF HAYVSYHVKC SEGFMHTRMR RRVESMIQAL DQAKPMEKTR
301: SMNNKSFKRL GLNDVNSK

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.