CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42863

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	KRH42863	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0654300-01	Rice	cytosol	16.73	71.88
OQU88580	Sorghum	plasma membrane	58.18	69.26
VIT_01s0011g05400.t01	Wine grape	mitochondrion	79.27	66.46
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	76.0	63.72
PGSC0003DMT400067754	Potato	mitochondrion	76.0	63.72
GSMUA_Achr5P09480_001	Banana	mitochondrion	74.91	63.38
KXG38865	Sorghum	peroxisome	73.09	62.23
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	71.27	60.68
TraesCS3D01G237300.1	Wheat	cytosol	70.91	60.37
TraesCS3B01G262900.2	Wheat	cytosol	70.55	60.06
Bra014893.1-P	Field mustard	mitochondrion	68.73	59.43
KRH45310	Soybean	mitochondrion	48.36	59.38
CDX98226	Canola	cytosol, mitochondrion	68.36	59.12
AT1G30825.1	Thale cress	mitochondrion	68.0	58.8
Bra023140.1-P	Field mustard	mitochondrion	67.64	58.12
CDY02334	Canola	mitochondrion	67.64	57.94
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	73.09	57.76
CDY58050	Canola	mitochondrion	67.27	57.63
HORVU3Hr1G059010.8	Barley	mitochondrion	70.91	55.71
CDX77566	Canola	mitochondrion	58.91	55.67
KRG90360	Soybean	cytosol	22.55	26.05
KRH33620	Soybean	cytosol	34.18	24.04

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	UniProt:A0A0R0FNM4	EMBL:ACUP02010027	InterPro:ARPC2	InterPro:ARPC2/4
EnsemblPlantsGene:GLYMA_16G094500	GO:GO:0003674	GO:GO:0003779	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041
GO:GO:0030833	GO:GO:0034314	GO:GO:0051015	InterPro:IPR034666	EnsemblPlants:KRH07553	ProteinID:KRH07553
ProteinID:KRH07553.1	PFAM:PF04045	PANTHER:PTHR12058	SUPFAM:SSF69645	UniParc:UPI0006ED6E43	SEG:seg

Description

hypothetical protein

Coordinates

chr16:-:15914865..15930406

Molecular Weight (calculated)

30837.4 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.056

Length

275 amino acids

Sequence
(BLAST)

001: MKNPHVLLLS VSLPTPSSET IFVCGLPFGA IEAIKAAYGN LVQILDPPRD GFNLTLKINL SKLPANQEQK HAFLVKVASI REVVLGAPLR VILEHLAART
101: VAPDLDPLVA LVHRPNESFF LFPQADKVTV VYPMRFNDSI DIVLATSFLQ EFVEARRTAG LNNTPPCSWS LTPPLELKEV PAANAGFVTF VIFPRHVEGQ
201: KLDRTVWNLS TFHAYVSYHV KCSEGFMHTR MRRRVESLIQ ALNRAKPDVE NSKKTSYNRS FKRLSLKDSR TNSFS

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.