Factsheet for TraesCS3A01G236900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G134300.3
TraesCS3B01G168100.1
TraesCS3D01G150600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	TraesCS3A01G134300.3	AT1G29170.1	17267444
AT1G30825.1	TraesCS3B01G168100.1	AT1G29170.1	17267444
AT1G30825.1	TraesCS3D01G150600.1	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G237300.1	Wheat	cytosol	98.14	98.14
TraesCS3B01G262900.2	Wheat	cytosol	97.83	97.83
HORVU3Hr1G059010.8	Barley	mitochondrion	97.21	89.71
KXG38865	Sorghum	peroxisome	89.47	89.47
Os01t0654300-01	Rice	cytosol	17.65	89.06
OQU88580	Sorghum	plasma membrane	60.06	83.98
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	90.09	83.62
GSMUA_Achr5P09480_001	Banana	mitochondrion	78.02	77.54
KRH07553	Soybean	cytosol	60.68	71.27
VIT_01s0011g05400.t01	Wine grape	mitochondrion	70.28	69.21
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	68.73	67.68
PGSC0003DMT400067754	Potato	mitochondrion	68.73	67.68
AT1G30825.1	Thale cress	mitochondrion	64.09	65.09
Bra014893.1-P	Field mustard	mitochondrion	63.78	64.78
CDX98226	Canola	cytosol, mitochondrion	63.16	64.15
Bra023140.1-P	Field mustard	mitochondrion	62.54	63.12
CDY58050	Canola	mitochondrion	62.54	62.93
CDY02334	Canola	mitochondrion	62.54	62.93
CDX77566	Canola	mitochondrion	56.66	62.89
KRH45310	Soybean	mitochondrion	36.22	52.23
TraesCS2A01G385000.1	Wheat	cytosol, mitochondrion	33.75	30.28

Protein Annotations

EnsemblPlants:TraesCS3A01G236900.1	EnsemblPlantsGene:TraesCS3A01G236900	Gene3D:3.30.1460.20	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030041	GO:GO:0030833	GO:GO:0034314	InterPro:ARPC2	InterPro:ARPC2/4	InterPro:IPR034666
ncoils:Coil	PANTHER:PTHR12058	PFAM:PF04045	SUPFAM:SSF69645	MapMan:20.2.2.1.4	:

Description

No Description!

Coordinates

chr3A:+:442768794..442772616

Molecular Weight (calculated)

36116.2 Da

IEP (calculated)

9.131

GRAVY (calculated)

0.011

Length

323 amino acids

Sequence
(BLAST)

001: MILLQSPSRF LLQILKDRIV SGDKGVDIDC HTVEFDDVRY HVQFSMRNPK VMVLSVALPL APPEAILYDG LPLGAIDAIK AAYGAVVQIL DPPKDCFDLT
101: MKINLTKLPT DEEQRNVVLT QIASVREVVL GAPLKLLLRH LASKTVAPNV DKLVALVHRP NESFFLAPQA DKVTVVYPMR FQDSIDIVLA TSFLQEFVEA
201: RRTAALNNAP SCMWSPVPPL ELKGVNADAL DANAGFVTFV VFPRHVEGRK LDKTVWSLLT FHAYVSYHVK CSEGFMHTRM RRRVESLIQA LDRAKSDAEK
301: LKKLVHGGSF RRLSMKHEGN SNH

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.