Factsheet for Bra014893.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010847.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30825.1	Bra010847.1-P	AT1G29170.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98226	Canola	cytosol, mitochondrion	98.74	98.74
Bra023140.1-P	Field mustard	mitochondrion	96.86	96.25
CDX77566	Canola	mitochondrion	85.85	93.81
AT1G30825.1	Thale cress	mitochondrion	92.77	92.77
KRH07553	Soybean	cytosol	59.43	68.73
VIT_01s0011g05400.t01	Wine grape	mitochondrion	70.75	68.6
PGSC0003DMT400067754	Potato	mitochondrion	69.5	67.38
Os01t0654300-01	Rice	cytosol	13.52	67.19
Solyc11g068610.1.1	Tomato	cytosol, mitochondrion	69.18	67.07
OQU88580	Sorghum	plasma membrane	47.8	65.8
GSMUA_Achr5P09480_001	Banana	mitochondrion	66.35	64.92
KXG38865	Sorghum	peroxisome	65.41	64.4
TraesCS3A01G236900.1	Wheat	cytosol, mitochondrion	64.78	63.78
TraesCS3B01G262900.2	Wheat	cytosol	64.47	63.47
TraesCS3D01G237300.1	Wheat	cytosol	63.84	62.85
Zm00001d007806_P003	Maize	mitochondrion, peroxisome	65.09	59.48
HORVU3Hr1G059010.8	Barley	mitochondrion	63.84	58.0
KRH45310	Soybean	mitochondrion	38.99	55.36
Bra005500.1-P	Field mustard	cytosol, nucleus, peroxisome	27.67	27.59

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	InterPro:ARPC2	InterPro:ARPC2/4	EnsemblPlantsGene:Bra014893	EnsemblPlants:Bra014893.1
EnsemblPlants:Bra014893.1-P	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0008150
GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041	GO:GO:0030833	GO:GO:0034314
InterPro:IPR034666	UniProt:M4DEH2	PFAM:PF04045	PANTHER:PTHR12058	SUPFAM:SSF69645	UniParc:UPI0002540EE8
SEG:seg	:	:	:	:	:

Description

AT1G30825 (E=1e-146) ARPC2A, DIS2 | DIS2 (DISTORTED TRICHOMES 2); structural molecule

Coordinates

chrA07:-:5480527..5482342

Molecular Weight (calculated)

35909.6 Da

IEP (calculated)

9.990

GRAVY (calculated)

-0.176

Length

318 amino acids

Sequence
(BLAST)

001: MMLQSHSRFL LQTLLTRAQN LDKAVELDYQ WIEFDDVRYH VQVTMKNPSI LLLSVSLPNP PPEAMSFDGL PLGAIEAIKT AYGTGFQILD PPRDGFSLTL
101: KLNFSKLRPD EAYRNSLLTK LASIREVVMG APLKIILRHL ASRTVAPELD RLVAIMHRPN ETFFLVPQAD KVTVAFPMRF KDSVDTILAT SFLKQFVEAR
201: RAASLSSAPS CSWSPTAPQE LEGAPKETLS ANAGFVTFVI MPRHVEGEKL DRTVWNLSTF HAYVSYHVKC SEGFMHTRMR RRVESMIQAL DQAKPLEKTR
301: SMNNKSFKRL GLNDVNSK

Best Arabidopsis Sequence Match ( AT1G30825.1 )
(BLAST)

001: MILLQSHSRF LLQTLLTRAQ NLDKAVELDY QWIEFDDVRY HVQVTMKNPN LLLLSVSLPN PPPEAMSFDG LPLGAIEAIK TTYGTGFQIL DPPRDGFSLT
101: LKLNFSKVRP DEELLTKLAS IREVVMGAPL KIIFKHLASR TVAPELDRLV AIMHRPNETF FLVPQADKVT VAFPMRFKDS VDTILATSFL KEFVEARRAA
201: ALNTAPSCSW SPTAPQELEG APKETLSANA GFVTFVIFPR HVEGKKLDRT VWNLSTFHAY VSYHVKFSEG FMHTRMRRRV ESMIQALDQA KPLEKTRSMN
301: NKSFKRLGLN EVNHTNSK

Arabidopsis Description

ARPC2AActin-related protein 2/3 complex subunit 2A [Source:UniProtKB/Swiss-Prot;Acc:Q8LGI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.