Factsheet for Bra010847.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004857.1-P
Bra009748.1-P
Bra014893.1-P
Bra016738.1-P
Bra017996.1-P
Bra019815.1-P
Bra023140.1-P
Bra030221.1-P
Bra038448.1-P
Bra039922.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29170.1	Bra016738.1-P	AT1G13180.1	17267444
AT1G29170.1	Bra019815.1-P	AT1G13180.1	17267444
AT1G29170.1	Bra014893.1-P	AT1G30825.1	17267444
AT1G29170.1	Bra023140.1-P	AT1G30825.1	17267444
AT1G29170.1	Bra030221.1-P	AT2G22640.1	15534215
AT1G29170.1	Bra039922.1-P	AT2G22640.1	15534215
AT1G29170.1	Bra030221.1-P	AT2G22640.1	17267444
AT1G29170.1	Bra039922.1-P	AT2G22640.1	17267444
AT1G29170.1	Bra004857.1-P	AT2G44690.1	17267444
AT1G29170.1	Bra017996.1-P	AT3G49290.1	17267444
AT1G29170.1	Bra038448.1-P	AT4G16340.1	17267444
AT1G29170.1	Bra009748.1-P	AT5G24310.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90172	Canola	nucleus	100.0	100.0
AT1G29170.1	Thale cress	nucleus	52.5	49.41
Bra005450.1-P	Field mustard	nucleus	33.96	36.71
Zm00001d025836_P001	Maize	cytosol	3.96	30.4
Zm00001d025835_P001	Maize	cytosol	3.96	30.4
Zm00001d032131_P001	Maize	cytosol, extracellular, plastid	4.06	27.08
KRH42863	Soybean	nucleus	32.29	23.22
GSMUA_AchrUn_...	Banana	cytosol	27.19	22.83
GSMUA_Achr10P...	Banana	cytosol	26.77	21.63
Solyc02g076840.2.1	Tomato	nucleus	28.96	21.37
TraesCS3B01G168100.1	Wheat	cytosol	28.12	21.03
HORVU3Hr1G029210.3	Barley	cytosol	28.23	20.94
TraesCS3D01G150600.1	Wheat	cytosol	27.29	20.42
GSMUA_Achr2P15470_001	Banana	nucleus	23.12	20.37
TraesCS3A01G134300.3	Wheat	cytosol	27.19	20.34
KXG31590	Sorghum	cytosol	27.81	19.46
Os01t0208600-01	Rice	cytosol	26.98	19.42
VIT_08s0058g00770.t01	Wine grape	cytosol	2.6	17.61
Zm00001d008906_P003	Maize	cytosol	25.31	17.42
Bra005107.1-P	Field mustard	cytosol	17.81	11.97
Bra013329.1-P	Field mustard	nucleus	21.77	9.12

Protein Annotations

EnsemblPlants:Bra010847.1	EnsemblPlants:Bra010847.1-P	EnsemblPlantsGene:Bra010847	Gene3D:1.20.5.340	Gene3D:1.20.58.1570	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0030036	GO:GO:0051127	InterPro:SCAR/WAVE_fam	PANTHER:PTHR12902	PANTHER:PTHR12902:SF1	SEG:seg
UniParc:UPI00025454B8	UniProt:M4D2Z4	MapMan:20.2.2.2.4	:	:	:

Description

AT1G29170 (E=7e-315) WAVE2, ATSCAR3, SCAR3 | WAVE2

Coordinates

chrA08:+:16768489..16772605

Molecular Weight (calculated)

105698.0 Da

IEP (calculated)

4.495

GRAVY (calculated)

-0.762

Length

960 amino acids

Sequence
(BLAST)

001: MSLSRLGVRN VYGTSQQAEF YGNVDREDPE AILNGVAVSG LIGVLRQLGD LAESAAEIFQ GIQEEVMATA SRSNQLKMRL QHIEATVPPL EKAVLAQTTH
101: LHFAYTGGVE WHPRIPHEQN HFIHDDLPNS FMDHYEECRD PPRLHMLDKF DINGPGSCLK RYSDPTYFRR ASSSLVKGNN KFQNNNMSCK IKKKKSSSRS
201: RDMSRLASMA NQNARKTLTS FSFSGQTSSS KSASTSDMEK RSDLQDHHSH TYDCLSTATS SLKAGEKQKG GLGSSSLTPG SCTIGSVLSE CETEDEHDNL
301: QFTPLQGQSA VGSSCVSWDE KAEIVEEPLG VQTDEASVVD ALDEKATSYG EGTGRVDIEN AESEPGLQQS NGIDEVKEMK AGSEIVREPR DSSEHETESE
401: GECFVDALNS IESESENEQG LKTSLEAVSS PCGVTGERLE KSSNKVEESC RSMDNGYLNA TDEMNHQDPL ESDNRSRSPL NDVCTTSNIT CGEDKIGFTV
501: VPAPENSLSD SSNPLYHSEH QKSEAKVSGE VEAIKIWTNG GLLGLNPSKP PVLEVPSLDC KAEERTFGSA EAEKDKSDDL VEHVLDTSSL GTQNLTVDQR
601: ECHETSSYGV FGGLSQKLFT NSFRRRDSLS HDNRQALPAT IPENDEVTTE KSRFGEQDKV LFREEAPIDW FASSPPLQHM KISLNPVDNT LQASRLKLKF
701: SDEDNNSNNT FPSFQLLPEA ATSLPDSCSD DDTFCMTSDI DYLSDYHSLS DSEQWEEHND SHERKEHDSF HESTHVDNNG EPSSLDTEAE NGCVALNFSY
801: LQSPVEPLPP PFPPAQWMVS KTGSETISEN KTTQSIQLQD ALRFAFEKHT SSSIVNKEEP NTVASAPKPE TKVHVKNNVK EDKQNANEKE TDADDFLQQI
901: RTQHVNLKPV VMTRTLSTAA AATTDPAINI KISAMLEKAN SIRQAVASND GDESDTWSDT

Best Arabidopsis Sequence Match ( AT1G29170.1 )
(BLAST)

0001: MPRNVYGMNQ SEVYRNVDRE DPKAILNGVA VTGLVGVLRQ LGDLAEFAAE IFHGIQEEVM ATASRSNQLK IRLQHIEATV PPLEKAMLAQ TTHIHFAYTG
0101: GLEWHPRIPI TQNHLIYDDL PHIIMDPYEE CRGPPRLHLL DKFDINGPGS CLKRYSDPTY FRRASSNLSQ GNKKFQKDKK HCKMKKKKTS SRSRDMSRLA
0201: SLANQNARKT FASFSFSGQT SSTKTTSTSD MEKRYDFQDH HSRSFESRSG SGYNECLSTA TSSLKTGERP KGVFVSSSLT PGSCTIASVL SECETEDAHD
0301: NFQFSPSQGQ AARGSSCVSW DEKAEIVESL GLQTDEASEM VEANSVVDTL DEKPSYGEGI GGVDFHSKDN ENDKSESGLR KRAGIDEVRE IKNGREIVGE
0401: PRDSEQETES EGECFVDALN TIESESENNQ GLQTSQVSSS CGVADERLEK SVCEQETEQN SYSVEDSCRS MDGLMANSFK NEENASSENV SVEMHQQNLQ
0501: AGSDINRLQK NDLCANKDMR NDSGGKDTIT FTFVPGLENS LVDSSNPLIH HGLQENQETE AESSGDLEAF KIWTNGGLLG LKPSKPPVLA MPSSLSPDCK
0601: TEERTVGFAE AEKDKADDLV ENASHRHVLN NSSLATPGTQ NPGSSNGIVM GIVDQRESHE TSSGVFGLSH KFLTSGFRRK DSFAHDRKTV PATIPENDEV
0701: TTERRRFCDQ DINEKTFMDP FRDEAPIDWI TSSPPLQHMK ISLNPADTLQ ASRLKLKFSD GDNTYNTFSS FQLLPETGTS LPDSYSDDDT FCRSSPYMSD
0801: TDYLSDNHSL SNSEPWEESS DSHGRKEQEL YDSFHESRHV DNNAEASPLG IKSESSCVAV NLSYLQNPAE PLPPPFPPMQ WMVSKTPSEK MEDKTQSLQL
0901: QEALRFAFEK HISLPTAKNE LPSMVTSAPK PEIKAHLKNN VREEKQSANA KETETGDFLQ QIRTQQFNLR PVVMTTTSSA TATTDPIINT KISAILEKAN
1001: SIRQAVASKD GDESDTWSDT

Arabidopsis Description

SCAR3Protein SCAR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP46]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.