Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G150600.1 | Wheat | cytosol | 94.47 | 94.54 |
| TraesCS3A01G134300.3 | Wheat | cytosol | 91.28 | 91.35 |
| HORVU3Hr1G029210.3 | Barley | cytosol | 91.28 | 90.57 |
| Os01t0208600-01 | Rice | cytosol | 66.67 | 64.17 |
| KXG31590 | Sorghum | cytosol | 61.6 | 57.65 |
| Zm00001d008906_P003 | Maize | cytosol | 56.23 | 51.76 |
| VIT_10s0003g01270.t01 | Wine grape | cytosol | 25.62 | 35.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.06 | 33.77 |
| GSMUA_Achr10P... | Banana | cytosol | 30.84 | 33.33 |
| AT2G34150.2 | Thale cress | nucleus | 21.11 | 33.01 |
| GSMUA_Achr2P15470_001 | Banana | nucleus | 27.49 | 32.39 |
| CDY17225 | Canola | nucleus | 19.78 | 31.32 |
| Bra010847.1-P | Field mustard | nucleus | 21.03 | 28.12 |
| CDX90172 | Canola | nucleus | 21.03 | 28.12 |
| Bra005450.1-P | Field mustard | nucleus | 19.24 | 27.82 |
| CDY43322 | Canola | nucleus | 20.25 | 27.28 |
| AT1G29170.1 | Thale cress | nucleus | 20.95 | 26.37 |
| CDY63143 | Canola | nucleus | 17.91 | 25.9 |
| KRH42863 | Soybean | nucleus | 26.64 | 25.62 |
| Solyc02g076840.2.1 | Tomato | nucleus | 24.3 | 23.98 |
| CDX78876 | Canola | nucleus | 13.24 | 23.42 |
| TraesCS2B01G106000.1 | Wheat | cytosol | 6.23 | 21.86 |
| KRH58965 | Soybean | nucleus | 16.51 | 21.41 |
| VIT_08s0058g00770.t01 | Wine grape | cytosol | 2.02 | 18.31 |
| CDX78875 | Canola | extracellular, vacuole | 9.81 | 15.38 |
| CDX99451 | Canola | nucleus | 17.37 | 11.7 |
| AT4G18600.1 | Thale cress | nucleus | 17.21 | 10.9 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 9.66 | 10.57 |
| TraesCS5B01G484800.1 | Wheat | nucleus | 18.38 | 10.56 |
| Bra013329.1-P | Field mustard | nucleus | 17.29 | 9.69 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | InterPro:IPR003124 | PFscan:PS51082 | PANTHER:PTHR12902 |
| PANTHER:PTHR12902:SF1 | InterPro:SCAR/WAVE_fam | EnsemblPlantsGene:TraesCS3B01G168100 | EnsemblPlants:TraesCS3B01G168100.1 | InterPro:WH2_dom | SEG:seg |
Description
No Description!
Coordinates
chr3B:-:168685061..168695719
Molecular Weight (calculated)
139789.0 Da
IEP (calculated)
4.713
GRAVY (calculated)
-0.733
Length
1284 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLVRFEVRN EVGLGDPGLY GGAGAGKRGG VAGAAGEAEP KALLEGVAVA GLVGILRQLG DLAEFAADVF HDLHEQVITT SARGRKVLTR VQNIEAALPS
0101: LEKAVKNQKS HIHFAYVPGS DWHTQLQNEQ NHLLSSDLPR FMMDSYEECR DPPRLYLLDK FDNAGAGACL KRYSDPSYFK KSWDVMRADK TAHLQKERKS
0201: HKIKRKGSRL KEPYHGQATS RYRNGELQRA LTAVQLTSSR QCASPSMDGR SFSEHRSTSD ARSNPDNISR SSSFSSKARL SFAEQASDTK PSVVPHENGH
0301: GKLSNTDTHK LNDGSSPILL SGNREDDLGD DSKQGSLSDE MNARSPSVEW HEKTAIVMTT SSVYCDDVVM DRAESAETKH IKPVQREFDH SEMETLEQQG
0401: ALLQKAKLLL SSGLNHRDEV PSETDNYMDA LNTLESETET EVDFQTKKQG KPVHSFNAHA PQIESADNIV SQLPDSSPAE FPDTSPNSRM LHTFERTANF
0501: PSLSSADAPD ISQHTLSGYT DIHPNEWSSV TTIPENNANE AAGDPTEISE PALQAYTATP PNQSPPHAND IPESKAEVAP RDSPEISKPG LSTYAVFPPN
0601: KESVVNQIPE NNVEDALEDG TVESTSCLVP EPAISFAPTS EASPAKILPG DTTGNSVISE KSPQDYPGEN HQEFGGCGMA EVSNSQTMPL NESSENGSAT
0701: QHLPTHAPTS SVELSSVKLW TNAGLFGLEP SKPPVGICPG SASQSYSETN QSAIRTPDAV YGQTDRPSDS STYFEHREHK NLNGKQASIS ELLESEGNAE
0801: NGAGTYSGTD LAGRNNLDVV SASSFSSIAQ RFLANTLQRR TSPKYNDLPI SSGRVNTDAN GFDDATVNST LAPKEAVFEA SQFEKKADNG MDGLPKSSIF
0901: SSRHYSEKSS PPLEHMKISF HPMSAFETSK LNLDFSDGNL HENVDDMMLP TFQLLPGSSV PQPGSGSESE DDTFGRSYSY SSYDDLSPHL YSNSELWDQE
1001: DGIGLEDHEL YNDSNQIGSS TTPVSSYMGF EQMNLSGEKS TVSLSDIGDH NGLGLLESHP AGELPNFDTL MSTSNLQNGD ALIPHNPVNL SPDEDQMPPP
1101: PPLPPMQWRT MRQTTSLDEE RDSTAKDILK NASSLPPVHT PVQEQHLPPC APPFPQGNVK EVNHQKVDVI KETSNLPNIF EIKSSLLQQI RDKPDLHKLN
1201: GHEKPKAVFN DVNSLDERGE LLQQIRSKTF NLRRTNGSKT NTSSQSTEST ANSSVVAILE KANAIRQAVA SDEGGDDDNW SDIN
0101: LEKAVKNQKS HIHFAYVPGS DWHTQLQNEQ NHLLSSDLPR FMMDSYEECR DPPRLYLLDK FDNAGAGACL KRYSDPSYFK KSWDVMRADK TAHLQKERKS
0201: HKIKRKGSRL KEPYHGQATS RYRNGELQRA LTAVQLTSSR QCASPSMDGR SFSEHRSTSD ARSNPDNISR SSSFSSKARL SFAEQASDTK PSVVPHENGH
0301: GKLSNTDTHK LNDGSSPILL SGNREDDLGD DSKQGSLSDE MNARSPSVEW HEKTAIVMTT SSVYCDDVVM DRAESAETKH IKPVQREFDH SEMETLEQQG
0401: ALLQKAKLLL SSGLNHRDEV PSETDNYMDA LNTLESETET EVDFQTKKQG KPVHSFNAHA PQIESADNIV SQLPDSSPAE FPDTSPNSRM LHTFERTANF
0501: PSLSSADAPD ISQHTLSGYT DIHPNEWSSV TTIPENNANE AAGDPTEISE PALQAYTATP PNQSPPHAND IPESKAEVAP RDSPEISKPG LSTYAVFPPN
0601: KESVVNQIPE NNVEDALEDG TVESTSCLVP EPAISFAPTS EASPAKILPG DTTGNSVISE KSPQDYPGEN HQEFGGCGMA EVSNSQTMPL NESSENGSAT
0701: QHLPTHAPTS SVELSSVKLW TNAGLFGLEP SKPPVGICPG SASQSYSETN QSAIRTPDAV YGQTDRPSDS STYFEHREHK NLNGKQASIS ELLESEGNAE
0801: NGAGTYSGTD LAGRNNLDVV SASSFSSIAQ RFLANTLQRR TSPKYNDLPI SSGRVNTDAN GFDDATVNST LAPKEAVFEA SQFEKKADNG MDGLPKSSIF
0901: SSRHYSEKSS PPLEHMKISF HPMSAFETSK LNLDFSDGNL HENVDDMMLP TFQLLPGSSV PQPGSGSESE DDTFGRSYSY SSYDDLSPHL YSNSELWDQE
1001: DGIGLEDHEL YNDSNQIGSS TTPVSSYMGF EQMNLSGEKS TVSLSDIGDH NGLGLLESHP AGELPNFDTL MSTSNLQNGD ALIPHNPVNL SPDEDQMPPP
1101: PPLPPMQWRT MRQTTSLDEE RDSTAKDILK NASSLPPVHT PVQEQHLPPC APPFPQGNVK EVNHQKVDVI KETSNLPNIF EIKSSLLQQI RDKPDLHKLN
1201: GHEKPKAVFN DVNSLDERGE LLQQIRSKTF NLRRTNGSKT NTSSQSTEST ANSSVVAILE KANAIRQAVA SDEGGDDDNW SDIN
001: MPLVRLQVRN VYGLGQKELH TKVDREDPKA ILDDVAVSGL VGILRQLGDL TEFAAEIFHG IQEEVMITAS RSNKLKMRLK QIEAKVPTIQ KTVLAQTNHI
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
101: HFAYTGGLEW HPRIPNVQNH FMYDELPPFI MTPYEDCREP PRLHLLDKFD INGPGSCLKR YSDPTHFKRA SRASKPSEIK KKKSIQRGRD ISRLASVANQ
201: SDRKTCTSLS FSGRTSTSKT ASTIEIESKS DLQEHRSFSF DSRSGGEKPK RVSSSSRFTP GSRTIASVLS ESESESDSPS QDLTARGSSS VSWHEKAEIV
301: ECNVLQCATD EAPEVMETNF VLDAEPVSRL KEHSAVEAVQ DIKPKELEMD NEDETESEGD DFVDALYTID SESENDEAFQ ATKEVQKNLY NDITEQETEK
401: ISNNFSVDET KCAATSELHL SSSPVYKSDE LIHQDPWAAS EISSGTHSYS NGFSNPLYDI SGIQEHQESE EVESSCDTES IKTWTNGNLL GLKPSKPKII
501: AETIPEIVED IDSETFQEHL REDYKAPFDW FTSSPPLDHM KISFKSSETL PSSELQLKLP DEYTFSSFQL VPETIATSLP DSDSDKDTFC RSSSYISDNS
601: DNDNRSVSMS EQQWEEESEG IRESKRQQEL YDSFHRVNAE ASSLPVPFPK IETTNGCLVE NVSYLQNPAE PLPPPLPPLQ WMVSKIPSAG FEDNNKQSLK
701: DALTQAFEKN NNSLTAVKKK EPHIVTVSDP KLVTKVHLKN NVRDYKQSHG NTNETEAGDF LHQIRTKQFN LRRVVRTKTS SSETTMNTNI SVILEKANSI
801: RQAVASDDGE GESDTWSDSD T
Arabidopsis Description
SCAR1Protein SCAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AWX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.