Factsheet for TraesCS6A01G211000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G196600.1
TraesCS2B01G224200.1
TraesCS2D01G204600.1
TraesCS3A01G134300.3
TraesCS3A01G369400.1
TraesCS3B01G168100.1
TraesCS3B01G401300.2
TraesCS3D01G150600.1
TraesCS3D01G362400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	TraesCS3A01G134300.3	AT1G29170.1	17267444
AT1G13180.1	TraesCS3B01G168100.1	AT1G29170.1	17267444
AT1G13180.1	TraesCS3D01G150600.1	AT1G29170.1	17267444
AT1G13180.1	TraesCS2A01G196600.1	AT2G22640.1	17267444
AT1G13180.1	TraesCS2B01G224200.1	AT2G22640.1	17267444
AT1G13180.1	TraesCS2D01G204600.1	AT2G22640.1	17267444
AT1G13180.1	TraesCS3A01G369400.1	AT3G27000.1	17267444
AT1G13180.1	TraesCS3B01G401300.2	AT3G27000.1	17267444
AT1G13180.1	TraesCS3D01G362400.1	AT3G27000.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G194100.1	Wheat	cytosol	100.0	100.0
TraesCS6B01G240500.1	Wheat	cytosol	99.77	99.77
HORVU6Hr1G053910.4	Barley	cytosol	97.42	94.12
Os02t0596900-01	Rice	cytosol	92.27	92.06
KXG30555	Sorghum	cytosol	91.1	89.84
Zm00001d017106_P001	Maize	cytosol	90.87	89.61
GSMUA_Achr6P21120_001	Banana	cytosol	85.71	85.71
VIT_01s0137g00280.t01	Wine grape	cytosol	85.25	85.05
PGSC0003DMT400027956	Potato	cytosol	85.71	84.92
Solyc05g013940.2.1	Tomato	cytosol	85.25	84.85
Zm00001d050981_P001	Maize	cytosol	90.16	83.88
Solyc04g024530.2.1	Tomato	cytosol	83.61	83.22
KRH59228	Soybean	nucleus	82.67	82.48
AT1G13180.1	Thale cress	cytosol	81.26	81.26
CDX98005	Canola	cytosol	80.09	80.09
Bra019815.1-P	Field mustard	cytosol	80.09	80.09
Bra016738.1-P	Field mustard	cytosol	79.86	79.86
CDY19392	Canola	cytosol	79.86	79.86
CDY21087	Canola	cytosol	79.63	79.63
CDY34585	Canola	cytosol	79.39	79.39
KRH59222	Soybean	cytosol	34.66	77.08
TraesCS7A01G311700.1	Wheat	cytosol	70.26	68.81
TraesCS5A01G000400.1	Wheat	golgi	33.72	38.2
TraesCS4A01G356100.2	Wheat	cytosol	33.49	37.73
TraesCS1A01G274400.1	Wheat	golgi	33.02	37.5
TraesCS3A01G377300.1	Wheat	cytosol	33.02	37.5
TraesCS5A01G124300.2	Wheat	golgi	33.72	35.21
TraesCS1A01G020500.2	Wheat	cytosol	33.49	35.14
TraesCS4A01G264400.3	Wheat	cytosol, plastid	31.38	34.18
TraesCS3A01G369400.1	Wheat	cytosol	29.74	31.75
TraesCS1A01G179000.1	Wheat	cytosol	31.85	30.22
TraesCS2A01G585700.1	Wheat	cytosol	26.23	26.05
TraesCS5A01G420600.1	Wheat	cytosol, nucleus	21.78	25.69
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	26.46	25.51
TraesCS6A01G162300.2	Wheat	cytosol	25.76	24.83

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp3	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0034314	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067
EnsemblPlantsGene:TraesCS6A01G211000	EnsemblPlants:TraesCS6A01G211000.1	TIGR:cd00012	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:+:383959729..383968195

Molecular Weight (calculated)

47801.6 Da

IEP (calculated)

5.667

GRAVY (calculated)

-0.313

Length

427 amino acids

Sequence
(BLAST)

001: MDPTSRPAVV IDNGTGYTKM GFAGNVEPCF ITPTAVAVNE SFSDQTRATA KGNWLAQHSA GVMADLDFLI GEEALARSRS SSTYSLSYPI RNGQVDNWDT
101: MEKFWQQCIF NYLRCDPEDH YFLLTESPLT PPETREYTGE IMFETFNVPG LYIAVQPVLA LAAGYTTTKC EMTGVVVDVG DGATHIVPVA DGYVIGNSIS
201: SIPLTGKDVT QFIQQLMKER GEHIPPEESF DVARRAKEMY CYTCSDIVKE FNKHDREPSK YIKRLTGIKP KTGAPYTCDI GYERFLGPEI FFHPEIYNND
301: FTTPLQDVID KCIQSSPIDT RRALYKNIVL SGGSTMFKDF HRRLQRDLKK IVDVRVRASN ARLGGDAKAQ PVEVNVVSHP IQRYAVWFGG SVLASTAEFY
401: EACHTKAEYE EYGASICRSN PVFKGMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.