Factsheet for TraesCS5A01G000400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G270700.1	Wheat	cytosol	49.34	100.0
TraesCS5D01G000400.1	Wheat	cytosol	100.0	100.0
GSMUA_Achr4P31250_001	Banana	cytosol	97.08	97.08
GSMUA_Achr2P15150_001	Banana	cytosol	89.39	96.56
GSMUA_Achr3P20240_001	Banana	cytosol	76.66	96.33
GSMUA_Achr6P02480_001	Banana	cytosol	75.6	95.96
TraesCS4A01G356100.2	Wheat	cytosol	96.29	95.78
GSMUA_Achr10P...	Banana	cytosol	83.55	95.74
HORVU5Hr1G000180.1	Barley	cytosol, nucleus	100.0	92.18
TraesCS1A01G274400.1	Wheat	golgi	90.98	91.22
TraesCS3A01G377300.1	Wheat	cytosol	90.72	90.96
TraesCS4A01G264400.3	Wheat	cytosol, plastid	93.9	90.31
TraesCS5A01G124300.2	Wheat	golgi	96.02	88.51
TraesCS1A01G020500.2	Wheat	cytosol	95.49	88.45
TraesCS1A01G179000.1	Wheat	cytosol	90.72	76.0
TraesCS3A01G369400.1	Wheat	cytosol	44.03	41.5
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	41.38	35.21
TraesCS5A01G420600.1	Wheat	cytosol, nucleus	33.69	35.08
TraesCS6A01G162300.2	Wheat	cytosol	40.32	34.31
TraesCS6A01G211000.1	Wheat	cytosol	38.2	33.72
TraesCS7A01G311700.1	Wheat	cytosol	37.93	32.8
TraesCS2A01G585700.1	Wheat	cytosol	31.3	27.44

Protein Annotations

EnsemblPlants:TraesCS5A01G000400.1	EnsemblPlantsGene:TraesCS5A01G000400	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS
InterPro:Actin_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406
ScanProsite:PS00432	ScanProsite:PS01132	SEG:seg	SMART:SM00268	SUPFAM:SSF53067	TIGR:cd00012
MapMan:20.2.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:228101..229326

Molecular Weight (calculated)

41795.2 Da

IEP (calculated)

5.286

GRAVY (calculated)

-0.201

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYDQEME TSKTSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSFIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFTG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT3G46520.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYEQELE TSKTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT12Actin-12 [Source:UniProtKB/Swiss-Prot;Acc:P53497]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.