Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G020000.1 | Wheat | cytosol | 92.63 | 100.0 |
| TraesCS1B01G024500.1 | Wheat | golgi, nucleus | 92.63 | 100.0 |
| Os05t0106600-01 | Rice | nucleus | 92.14 | 99.47 |
| HORVU1Hr1G002840.6 | Barley | plasma membrane | 98.53 | 98.53 |
| Zm00001d011086_P005 | Maize | cytosol | 91.15 | 98.41 |
| KXG21029 | Sorghum | cytosol | 91.15 | 98.41 |
| Zm00001d035720_P002 | Maize | cytosol | 91.15 | 98.41 |
| TraesCS4A01G356100.2 | Wheat | cytosol | 90.66 | 97.36 |
| KRH64098 | Soybean | cytosol | 90.17 | 97.35 |
| KRH43389 | Soybean | cytosol | 90.17 | 97.35 |
| KRH59535 | Soybean | cytosol | 90.17 | 97.35 |
| AT5G09810.1 | Thale cress | cytosol | 90.17 | 97.35 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 79.36 | 97.29 |
| CDX69885 | Canola | cytosol | 89.93 | 97.08 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 89.93 | 97.08 |
| CDY21607 | Canola | cytosol | 89.93 | 97.08 |
| CDX85794 | Canola | cytosol | 84.03 | 96.88 |
| CDY30296 | Canola | cytosol | 84.03 | 96.88 |
| CDY31972 | Canola | cytosol | 84.03 | 96.88 |
| CDY40061 | Canola | cytosol | 84.03 | 96.88 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 89.68 | 96.82 |
| Bra028615.1-P | Field mustard | cytosol | 89.68 | 96.82 |
| PGSC0003DMT400047481 | Potato | cytosol | 89.68 | 96.82 |
| Bra009081.1-P | Field mustard | cytosol | 83.78 | 96.6 |
| CDY56544 | Canola | cytosol | 89.43 | 96.55 |
| CDX81140 | Canola | cytosol | 89.43 | 96.55 |
| Zm00001d035722_P007 | Maize | plasma membrane | 91.15 | 96.36 |
| PGSC0003DMT400010174 | Potato | cytosol | 89.19 | 96.29 |
| Solyc11g005330.1.1 | Tomato | nucleus | 89.19 | 96.29 |
| Bra006033.1-P | Field mustard | cytosol | 89.19 | 96.29 |
| Solyc01g104770.2.1 | Tomato | nucleus | 88.94 | 96.02 |
| PGSC0003DMT400076499 | Potato | cytosol | 45.45 | 95.85 |
| TraesCS5A01G000400.1 | Wheat | golgi | 88.45 | 95.49 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 87.47 | 94.43 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 87.47 | 94.43 |
| TraesCS1A01G274400.1 | Wheat | golgi | 85.75 | 92.82 |
| Solyc04g071260.2.1 | Tomato | plastid | 85.5 | 92.31 |
| TraesCS3A01G377300.1 | Wheat | cytosol | 84.77 | 91.76 |
| CDX99315 | Canola | cytosol | 72.48 | 91.33 |
| AT1G49240.1 | Thale cress | cytosol | 84.52 | 91.25 |
| Bra022356.1-P | Field mustard | cytosol | 72.24 | 91.02 |
| AT3G18780.3 | Thale cress | cytosol | 84.28 | 90.98 |
| CDX82326 | Canola | cytosol | 84.28 | 90.98 |
| CDX92272 | Canola | cytosol | 84.28 | 90.98 |
| CDX95498 | Canola | cytosol | 84.28 | 90.98 |
| CDY18545 | Canola | cytosol | 84.28 | 90.98 |
| CDY61982 | Canola | cytosol | 84.28 | 90.98 |
| CDX92271 | Canola | cytosol | 70.27 | 90.22 |
| TraesCS5A01G124300.2 | Wheat | golgi | 90.42 | 89.98 |
| PGSC0003DMT400076501 | Potato | cytosol | 43.0 | 87.5 |
| TraesCS4A01G264400.3 | Wheat | cytosol, plastid | 83.78 | 86.99 |
| KXG21030 | Sorghum | cytosol | 82.56 | 86.38 |
| GSMUA_Achr2P08030_001 | Banana | cytosol | 72.24 | 84.0 |
| Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 71.99 | 83.0 |
| Zm00001d011087_P001 | Maize | plastid | 91.15 | 81.72 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 89.43 | 79.13 |
| TraesCS1A01G179000.1 | Wheat | cytosol | 85.75 | 77.56 |
| PGSC0003DMT400087294 | Potato | mitochondrion | 52.09 | 77.37 |
| PGSC0003DMT400022210 | Potato | cytosol | 63.88 | 70.65 |
| PGSC0003DMT400022205 | Potato | cytosol | 62.65 | 69.67 |
| PGSC0003DMT400074882 | Potato | cytosol | 62.65 | 68.92 |
| PGSC0003DMT400074887 | Potato | cytosol | 59.95 | 65.95 |
| PGSC0003DMT400088088 | Potato | cytosol | 30.47 | 63.92 |
| TraesCS3A01G369400.1 | Wheat | cytosol | 41.52 | 42.25 |
| TraesCS5A01G356000.1 | Wheat | cytosol, nucleus | 39.07 | 35.89 |
| TraesCS5A01G420600.1 | Wheat | cytosol, nucleus | 31.2 | 35.08 |
| TraesCS6A01G162300.2 | Wheat | cytosol | 38.08 | 34.99 |
| TraesCS6A01G211000.1 | Wheat | cytosol | 35.14 | 33.49 |
| TraesCS7A01G311700.1 | Wheat | cytosol | 35.63 | 33.26 |
| TraesCS2A01G585700.1 | Wheat | cytosol | 30.22 | 28.6 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G020500.2 | EnsemblPlantsGene:TraesCS1A01G020500 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Actin | InterPro:Actin/actin-like_CS |
| InterPro:Actin_CS | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF252 | PFAM:PF00022 | PRINTS:PR00190 | ScanProsite:PS00406 |
| ScanProsite:PS00432 | ScanProsite:PS01132 | SMART:SM00268 | SUPFAM:SSF53067 | TIGR:cd00012 | MapMan:20.2.1 |
Description
No Description!
Coordinates
chr1A:+:10067169..10068801
Molecular Weight (calculated)
45280.3 Da
IEP (calculated)
4.912
GRAVY (calculated)
-0.178
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE TAKNSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MESSGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQVRFL FSPTFYNPSE PEPTSEICSI WLCLYQMWIS KDEYDESGPA
401: IVHRKCF
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE TAKNSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSMIG MESSGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQVRFL FSPTFYNPSE PEPTSEICSI WLCLYQMWIS KDEYDESGPA
401: IVHRKCF
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.